Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0028 ATGGCTTCGTCTTCTTCTGCTCCGTTTGATGAGTGTGATCAGGAAGGTTTAGGGTTATCGCAAGAAGACTACGACCTGATGTATGGGTCTGAATCCGGATGGGTGGAGGCTCGATCTTCGTGCGATCATCTGGCCTCCTTATCCGCCGATCTCAGCCACATTCCGCCTCCCGGCACACCCTGCCACACCTGCCAACACCCCTCCGAAAACTGGCTCTGCCTCTCCTGCAAGCAGGTCCTCTGTGGCCGTTTCGTCAACAAGCACATGCTCCACCACTTCCACCACACTAATCACTCTGTCGCCCTCAGTTTCAGCTTACATTATCAAATTCGGCGAGCCTCCACCACTCCCTCTTATTCAACATCAACCTTCCTCTGCCACCTCGGATTAGGACAATGGGATGCAGATGAATTGAAGAAGGATTATATGAACTAG 435 0.5218 MASSSSAPFDECDQEGLGLSQEDYDLMYGSESGWVEARSSCDHLASLSADLSHIPPPGTPCHTCQHPSENWLCLSCKQVLCGRFVNKHMLHHFHHTNHSVALSFSLHYQIRRASTTPSYSTSTFLCHLGLGQWDADELKKDYMN* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0028 144 Pfam Zn-finger in ubiquitin-hydrolases and other protein 61 105 IPR001607 GO:0008270
Vra11g0028 144 PANTHER HISTONE DEACETYLASE-LIKE PROTEIN 3 105 - -
Vra11g0028 144 SMART Zf_UBP_1 60 109 IPR001607 GO:0008270
Vra11g0028 144 Coils Coil 135 144 - -
Vra11g0028 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 133 IPR013083 -
Vra11g0028 144 SUPERFAMILY RING/U-box 39 105 - -
Vra11g0028 144 ProSiteProfiles Zinc finger UBP-type profile. 39 142 IPR001607 GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0028 - - var:108319921 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0028 11 250794 252331 Vra11g0028 11 250794 252331 ECH