Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0025 ATGGCTGTGGCTATGTCTCTGTCTTTCGGGCTCTTGTCTTCCTCCGTTCTCCTTCCAGAGGCCCACACGCTGAGCTTCACGAGGCCTTCGCGTTCTGCTTCTGCTTCTCCACTGCGCATGGTTCGAACCGTTATCTCTTGCAAGGTCTCTCAGTCCGACCAAGGAACCCGCAAAATCCGTGGCATCATGAAACCCCGTGATGTCACCCCTGAAATGGCAGCCCTCGTCGGCGCTCAACAGATTTCCAGAACCCAAGCCCTCAAACTCATTTGGGCTTATATCAAGGCCAACAATCTTCAGGACCCTGAAGACAAGAGGACTATAATTTGTGATGAGAAGCTGAAGAAGATATTTGAAGAGAGAGATCGAGTTGGTATGCTAGAGGTTGCTCGCTTGATTAGCCCTCACTTCCTTAAAACTGAAGTTTAA 429 0.4988 MAVAMSLSFGLLSSSVLLPEAHTLSFTRPSRSASASPLRMVRTVISCKVSQSDQGTRKIRGIMKPRDVTPEMAALVGAQQISRTQALKLIWAYIKANNLQDPEDKRTIICDEKLKKIFEERDRVGMLEVARLISPHFLKTEV* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0025 142 Gene3D SWIB/MDM2 domain 56 142 IPR036885 -
Vra11g0025 142 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 138 - -
Vra11g0025 142 SUPERFAMILY SWIB/MDM2 domain 58 140 IPR036885 -
Vra11g0025 142 ProSiteProfiles SWIB/MDM2 domain profile. 61 139 IPR003121 -
Vra11g0025 142 PANTHER EXPRESSED PROTEIN-RELATED 1 138 - -
Vra11g0025 142 SMART swib_2 62 142 IPR019835 -
Vra11g0025 142 CDD SWIB-MDM2_like 68 137 - -
Vra11g0025 142 Pfam SWIB/MDM2 domain 64 137 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0025 Vra-Chr11 238779 239860 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vra11g0025 SWIB 2.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0025 - - var:108333445 172.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0025 11 238779 239860 Vra11g0025 11 238779 239860 ECH