Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0020 ATGAGTTTAGACTCGTCTCGATCAGCTAATTCTAAACGAAGTTTCTCTAATTCTATATCTTCCAACCGCTCCAACGATAGCTCTAAAAAGAACAGTAAAAGAAAGAAGACAATCACCAACCAGAAAACCCTAGGCGCTGTCTGGGGCTCAAATTCGAGTTCTCGCGCTTCTTCAAGAAATTCCGCCTTCTCCGGTTTTGCCAGTTATATGACAGAGAAGAATAGGAAACTACACAACCAATTTGACGCCGAGGCTTCCGCGTCTTCTTTAAGTGACTCTACTGTAGCGAAGCCTATTTTCAGTGGAGTTTCAATTTTTGTTGATGGTTTCACAGTTCCTTCCAGCCAGGAACTGCGGAGCTACATGCTTAAGAATGGAGGAAGATTCGAGAATTATTTCTCTAGACACCGTGTAACACATATTATATGCAGTAATCTGCCTGATAGTAAAGTTAAGAACCTCAGAGCCTTCAGTGCAGGGTTGCCAGTAGTAAAACCCACTTGGATTTTAGATTCTGTTGCTGCTAATAGACTTCTGAGCTGGGTACCTTACCAGCTGGACCAACTAGCTAATAAACAATCAAAGCTGTCAGCCTTCTTCACAATGAAAAGTAGTAAAATGTCGGAGGATGCTTTAACAAATTCCCTATGTCAAGTAGTATCAGATGTTGAAGATTCATCTATGAGGGTTGGTCAAACAGATTCTGATGATAGAAACTTATCCAAAGTTGGGGAAATGAGTGAACATATTGGACAAATCAGTACCACATCTGGTGATATTGAGAATAGTAATGCAATTATCACTGAGGAGCCAACTAGTGTAAGAGTTAAGTTTGATGAAGAGCAAGCAGCTAGAAGCAATGCTGCTGCGAAAGATGAGAGCAATGTCAAAAGTGAACTTGGACCCACTCATCAAGCACCTTCTACATCATTTAGTTCTCACTGCTCAGATGAGCAGAATGCACGAGAATTTCCAAGTTCTTCAGGCACTAAGCCTTTTAAACAGTGTCATTCAACTTTTGCAGACCCCAATTTCGTGGAAAATTATTTTAAGAGCTCACGACTACACTTTATAGGAACCTGGCGAAATCGGTATCGAAAGCGTTTTTCTGCATTGTCTTCTGGGTTTAAGAATGAAAATTCTAATATTAGTGCCTCTAATACTTCTTCAAATTCAGTTATTATCCATGTTGACATGGACTGTTTTTTTGTTTCAGTTGTTATTCGGAACCACCCTGAATTGTTGGATCAGCCTGTAGCTGTGTCTCATTCAAATAACTCAAATGGAACTGCTGAGATTTCTTCTGCTAACTACCCAGCTCGTAGTCATGGTATTAGAGCTGGTATGTTTGTTCGAGATGCCAAGGCTCTTTGTCCCCAACTTGTTATCTTTCCTTACAACTTTGAAGCTTATGAGGAAGTAGCTGATCAATTTTATAGTATATTGCATCAGCATTGCAACAAAGTGCAGGCTGTAAGCTGTGATGAAGCATTTTTAGATGTCACAGATTTAGAGGTTGAAGATCCCAAACTTTTAGCTTCATCTATTAGAGAAGAGATCTATAAGACCACCGGATGCACAGCTAGTGCTGGTATAGCTGGAAATATGCTTATGGCTCGTATTGCTACTAGAACTGCAAAACCAAATGGTCAATATTACATAACTACAGAAAAGGTTGAAGATCATTTATGCCAACTCCCAATTAATTCACTTCCAGGAATAGGACATGTTTTGCAGGAGAAATTGAAGAAACAGAATATTTACACTTGTGGACAATTACGCATTATTTCCAAGGCCTCACTGCAGAGGGACTATGGTATAAAAACAGGAGAAATGCTGTGGAATTATAGCAGAGGAATTGATAACCGGTTAGTTGGGAACTTTCAGGAAAGCAAGACCGTTGGTGCTGATGTAAATTGGGGAGTGAGATTCAAAGATATAAAAGATTGTTGTGGAGTGCAGGGGCGCACATTCACTCTGAAGATCAAAAAGAGAAGGAAAGGTGCTGGTGAACCTGCAAAGTTTATGGGCTGTGGGGACTGTGAAAATCTGAGTCACTCTATAACGGTTCCTCTTGCTACTGATAACGTGGAAATACTCCAAAGAATTGTAAAGCAGCTGTTTGGATGTTTTAACATAGATGTCAAGGAGATTCGAGGTATTGGCTTGCAAGTTTCCAGACTTGAAAGTGCAGAAGCTTCTAAACGAGGTACAACAAAATATACTTTGAAATCATGGCTCACTTCTGCATCTGCTGGTGTTGGAAATCAGACATATCCTATAGGTAATGACAAGCACAGCAGGGATAACACTTCCAGTCTTGCATGTGTAAATTTGCTAGAGTCTTCAGTGGAAATGGACAATAAAATACCAGCTAATGAGGCTAGTACTGACCCAATTTCAACACCGCCCCCCTTATGTAACCTTGACATTGAAGTTATAAGGAATCTTCCCCCGGATGTATTTTCAGAATTAAATGAAATTTACAGAGGGAAGTTAGTTGATTATATTGCTAACTGGAAAAACACAAGTGAGAGCTCCAGCCTTTCAGGAAACTCATTTTGTGAGCAAAAAGCGATAAACAACGAAGAGGAACCTTCCTATTCTGAACCGATTCCTCAAGGCAATTTATTATCAAAAAACAAGGCAAAGCAATATGTGTCGAGCAATAGTGAAGGCGAAACTATACCATATTCAGTCCGTGGACCCAATTTCAAGTTTACACACCATTCTAGTTTTGAAAACAATGATTTGTTTCCTTCTTCTTTGAGTCAAGTTGATGGTTCAGTGTTTCAACAATTGCCTGAGGATTTTAAAGCTGACATTGTTGAGCAGCTTCCTGCACACAGGAGGCCAGATATTTGCTCCAATGTTGTGATTCCACCTCTTGAAAACCATTCGTTGTCAGTAGGCGTTGAAGTTTCTGATAATTCTCCTATATGTAGTTATAATAATGACAGTCTATGGGTTGGAAATCCTCCAAATTGGGTTGAGAAGTTCAAAGGTGGCAGTTGCTTAATTTTAAAGAAACTTGCAGAAATGTATTTAAGATCAGGGTTGGCAAACACATTGTCTTCAGTTTTGCACCAAATTATATCTGAATTCTATGAGCTAAATCTGGCCCAGCAGTTTTCTGATGAAACTGTTGACATTATGTGTGAGCTACTGAGGCAGTATATCAAAGTGAAGATTGAAAGAGATATTGAAGAGATTTATATATGTTTCCGACTTCTGAAAAGGTTTGCGGCCAAGTCCCAATTTTTCCTACAAGTATATGATACTGTATATCCTTACCTTCAGTGGCAGCTGGAAAGGGTAGATTTAGTCATTTTGGAGAACCGTCTGATTAAATCAATACAGAAGCTGCTTGTATAA 3375 0.3941 MSLDSSRSANSKRSFSNSISSNRSNDSSKKNSKRKKTITNQKTLGAVWGSNSSSRASSRNSAFSGFASYMTEKNRKLHNQFDAEASASSLSDSTVAKPIFSGVSIFVDGFTVPSSQELRSYMLKNGGRFENYFSRHRVTHIICSNLPDSKVKNLRAFSAGLPVVKPTWILDSVAANRLLSWVPYQLDQLANKQSKLSAFFTMKSSKMSEDALTNSLCQVVSDVEDSSMRVGQTDSDDRNLSKVGEMSEHIGQISTTSGDIENSNAIITEEPTSVRVKFDEEQAARSNAAAKDESNVKSELGPTHQAPSTSFSSHCSDEQNAREFPSSSGTKPFKQCHSTFADPNFVENYFKSSRLHFIGTWRNRYRKRFSALSSGFKNENSNISASNTSSNSVIIHVDMDCFFVSVVIRNHPELLDQPVAVSHSNNSNGTAEISSANYPARSHGIRAGMFVRDAKALCPQLVIFPYNFEAYEEVADQFYSILHQHCNKVQAVSCDEAFLDVTDLEVEDPKLLASSIREEIYKTTGCTASAGIAGNMLMARIATRTAKPNGQYYITTEKVEDHLCQLPINSLPGIGHVLQEKLKKQNIYTCGQLRIISKASLQRDYGIKTGEMLWNYSRGIDNRLVGNFQESKTVGADVNWGVRFKDIKDCCGVQGRTFTLKIKKRRKGAGEPAKFMGCGDCENLSHSITVPLATDNVEILQRIVKQLFGCFNIDVKEIRGIGLQVSRLESAEASKRGTTKYTLKSWLTSASAGVGNQTYPIGNDKHSRDNTSSLACVNLLESSVEMDNKIPANEASTDPISTPPPLCNLDIEVIRNLPPDVFSELNEIYRGKLVDYIANWKNTSESSSLSGNSFCEQKAINNEEEPSYSEPIPQGNLLSKNKAKQYVSSNSEGETIPYSVRGPNFKFTHHSSFENNDLFPSSLSQVDGSVFQQLPEDFKADIVEQLPAHRRPDICSNVVIPPLENHSLSVGVEVSDNSPICSYNNDSLWVGNPPNWVEKFKGGSCLILKKLAEMYLRSGLANTLSSVLHQIISEFYELNLAQQFSDETVDIMCELLRQYIKVKIERDIEEIYICFRLLKRFAAKSQFFLQVYDTVYPYLQWQLERVDLVILENRLIKSIQKLLV* 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0020 1124 MobiDBLite consensus disorder prediction 282 333 - -
Vra11g0020 1124 CDD BRCT_Rev1 99 186 - -
Vra11g0020 1124 Gene3D - 566 620 - -
Vra11g0020 1124 CDD PolY_Rev1 345 728 - -
Vra11g0020 1124 ProSiteProfiles UmuC domain profile. 394 575 IPR001126 GO:0006281
Vra11g0020 1124 Pfam BRCT domain, a BRCA1 C-terminus domain 98 184 IPR001357 -
Vra11g0020 1124 Gene3D - 343 376 - -
Vra11g0020 1124 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 630 726 IPR036775 GO:0003684|GO:0006281
Vra11g0020 1124 MobiDBLite consensus disorder prediction 288 333 - -
Vra11g0020 1124 Gene3D - 630 736 IPR036775 GO:0003684|GO:0006281
Vra11g0020 1124 Gene3D - 411 465 - -
Vra11g0020 1124 SUPERFAMILY BRCT domain 54 188 IPR036420 -
Vra11g0020 1124 Pfam impB/mucB/samB family C-terminal domain 652 735 IPR017961 GO:0003684|GO:0006281
Vra11g0020 1124 Gene3D - 394 555 IPR043128 -
Vra11g0020 1124 PANTHER DNA REPAIR PROTEIN REV1 35 1101 - -
Vra11g0020 1124 Pfam impB/mucB/samB family 397 543 IPR001126 GO:0006281
Vra11g0020 1124 ProSiteProfiles BRCT domain profile. 95 186 IPR001357 -
Vra11g0020 1124 SUPERFAMILY DNA/RNA polymerases 388 625 IPR043502 -
Vra11g0020 1124 MobiDBLite consensus disorder prediction 1 26 - -
Vra11g0020 1124 MobiDBLite consensus disorder prediction 1 44 - -
Vra11g0020 1124 Gene3D BRCT domain 89 186 IPR036420 -
Vra11g0020 1124 SMART BRCT_7 97 176 IPR001357 -
Vra11g0020 1124 PIRSF REV1 6 1104 IPR012112 GO:0003684|GO:0006281|GO:0016779|GO:0042276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0020 K03515 - gmx:100778409 1697.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0020 11 201705 215255 Vra11g0020 11 201705 215255 ECH