Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0015 ATGTCGATTTCGGGCATCCAGGGGCAGCCTCTCGAGGTTACGGTGGTGTCGTGCTCCAAGCTGAAGGACACAGAATGGATTTCACGGCAAGATCCGTACGTTTGCATTGAGTATGGCAGCACCAAGTTCCGCACCAGAACCTGCACCGACGGCGGTAAGAACCCCGTCTTTCAGGAGAAGTTCGTTTTTCCCCTCATCGAAGGCCTTCGGGAGATCAACGTCCTTGTTTGGAACAGCAACACTCTCACCTTCGACGATTTCATCGGAAGCGGAAAGATTCAGCTGCACAAGGTTCTCTCTCAAGGCTTCGACGACTCTGCTTGGCCACTTCAGACCAAATCTGGCAGATATTCTGGCGAAGTCAAAGTCATTCTGCACTATGCAATTGCAAATCAAAAGCATAAATCAGGCTCCGGCCACGCTCCATCTGCACCTCCCTATATGTCAACATCAACTCCTCCATTCCCTTCTTATTCTAATCCTTCTCTAGCATCCTCCTACCCACCACCTCCTTATTCTACTTCCTCCTATCCACCACATCCCTCTGCAACTCCTTACCACCATACAACTGGATCATACCCACCGGTGGCATCCACAGCCTCATACCCACCGGTAGCATCCACAGACTCATACCCACCGGTAGCATCCACAGCCTCATACCCACCGCCTCCCACAGCTTACCCACCCCATCCCTCACATTCATCTCCCTATCCACAACACTCCTACCCTGCATCATCTCCCTATCCACCCTCCTCGTATCCTCCTCCACATTCCTATCCGCCTGCTTCAACTTATCCACCATCTTCGTATCCACCGCCTACTGGTTACACTCCTGGAATATACCCTCCACCGCCATACTGA 861 0.5203 MSISGIQGQPLEVTVVSCSKLKDTEWISRQDPYVCIEYGSTKFRTRTCTDGGKNPVFQEKFVFPLIEGLREINVLVWNSNTLTFDDFIGSGKIQLHKVLSQGFDDSAWPLQTKSGRYSGEVKVILHYAIANQKHKSGSGHAPSAPPYMSTSTPPFPSYSNPSLASSYPPPPYSTSSYPPHPSATPYHHTTGSYPPVASTASYPPVASTDSYPPVASTASYPPPPTAYPPHPSHSSPYPQHSYPASSPYPPSSYPPPHSYPPASTYPPSSYPPPTGYTPGIYPPPPY* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0015 286 MobiDBLite consensus disorder prediction 179 215 - -
Vra11g0015 286 ProSiteProfiles C2 domain profile. 1 109 IPR000008 -
Vra11g0015 286 CDD C2 11 108 - -
Vra11g0015 286 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 9 127 IPR035892 -
Vra11g0015 286 Gene3D C2 domain 9 128 IPR035892 -
Vra11g0015 286 Pfam C2 domain 11 101 IPR000008 -
Vra11g0015 286 MobiDBLite consensus disorder prediction 216 286 - -
Vra11g0015 286 SMART C2_3c 10 107 IPR000008 -
Vra11g0015 286 MobiDBLite consensus disorder prediction 169 286 - -
Vra11g0015 286 PANTHER CONSERVED SERINE PROLINE-RICH PROTEIN (AFU_ORTHOLOGUE AFUA_2G01790) 3 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0015 Vra-Chr11 169991 171685 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0015 - - vra:106777522 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0015 11 169991 171685 Vra11g0015 11 169991 171685 ECH