Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0772 ATGTTTCATTTGACTTTGTCTCAGGCGGCTGTAACTGTTCCTATTGGCAGCGATTTGTCTCTCAGAAGATCTGCCTTCAAGGCCCCTAACTTAAACTTTCGGGATAAGCCATGGGCACCAGTATTAACTTTGGATTTGAAGGCTAACAGTTCTTGTTTAAGAAGTCGGAATGTGGTATGCATGTCAGTGCAACAAGCAAGTGTACCCAAAGTATCCGTCTCACCTTTAGAACTGGAAGATGCGAAAGAACCTCCATTGAACTTGTACAAACCTAAAGAGCCCTATACAGCAACTATTGTGTCTGTTGAGAGGCTTGTGGGACCGAAAGCTCCTGGGGAAACTTGTCATATTGTGATTGATCATGGTGGAAATGTTCCCTACTGGGAAGGACAGAGTTATGGTGTTATTCCTCCAGGTGAAAATCCAAAGAAACCCGGGGCTCCCCATAATGTACGACTATATTCAATTGCTTCCACGAGGTATGGAGACTCTTTTGATGGTAAAACAGCCAGCTTGTGTGTGCGCCGTGCTGTTTACTATGATCCTGAGACAGGAAAGGAAGATCCGTCCAAGAATGGCGTCTGTAGCAATTTTCTGTGTGACTCAAAGCCTGGAGACAAAATTAAGATCACAGGCCCTTCAGGGAAGATAATGCTTTTGCCTGAGGATGACCCTAATGCTACCCATATAATGATTGCCACTGGCACTGGTGTTGCTCCATTCAGAGGCTATCTACGTCGAATGTTCATGGAATCTGTCCCTACATACAAGTTCGGTGGACTGGCATGGCTTTTCCTTGGCGTTGCCAACTCTGACAGTCTTCTCTATGATGAGGAATTCAGTAAATACCTCACGGATTATCCAGATAATTTCCGGTATGATCGAGCCCTTAGCAGAGAACAAAAGAACAAGAACGGAGGGAAAATGTATGTTCAGGATAAGATTGAGGAGTACAGTGATGAAATCTTCAAACTCCTGGATAACGGGGCCCACATATATTTTTGTGGTCTAAAAGGTATGATGCCTGGGATCCAAGACACTCTGAAGAGGGTTGCTGAGCAACGAGGAGAAAGTTGGGAAGAGAAGCTTTCTCAACTTAAGAAGAACAAACAGTGGCATGTTGAGGTCTACTGA 1134 0.4453 MFHLTLSQAAVTVPIGSDLSLRRSAFKAPNLNFRDKPWAPVLTLDLKANSSCLRSRNVVCMSVQQASVPKVSVSPLELEDAKEPPLNLYKPKEPYTATIVSVERLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPETGKEDPSKNGVCSNFLCDSKPGDKIKITGPSGKIMLLPEDDPNATHIMIATGTGVAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANSDSLLYDEEFSKYLTDYPDNFRYDRALSREQKNKNGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLKGMMPGIQDTLKRVAEQRGESWEEKLSQLKKNKQWHVEVY* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0772 377 PIRSF FNR-PetH 8 377 IPR035442 GO:0016491
Vra10g0772 377 SUPERFAMILY Riboflavin synthase domain-like 82 223 IPR017938 -
Vra10g0772 377 PIRSF Frd-NADP+_RD 7 377 IPR015701 GO:0016491
Vra10g0772 377 PANTHER FERREDOXIN--NADP REDUCTASE, EMBRYO ISOZYME, CHLOROPLASTIC 7 377 - -
Vra10g0772 377 Gene3D - 215 376 IPR039261 -
Vra10g0772 377 PANTHER - 7 377 IPR015701 GO:0016491
Vra10g0772 377 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 92 220 IPR017927 GO:0016491
Vra10g0772 377 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 224 377 IPR039261 -
Vra10g0772 377 CDD CYPOR_like_FNR 87 377 - -
Vra10g0772 377 Coils Coil 349 369 - -
Vra10g0772 377 Gene3D Translation factors 76 214 - -
Vra10g0772 377 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 127 137 IPR001709 GO:0016491
Vra10g0772 377 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 152 159 IPR001709 GO:0016491
Vra10g0772 377 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 193 202 IPR001709 GO:0016491
Vra10g0772 377 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 230 249 IPR001709 GO:0016491
Vra10g0772 377 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 260 269 IPR001709 GO:0016491
Vra10g0772 377 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 272 283 IPR001709 GO:0016491
Vra10g0772 377 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 308 324 IPR001709 GO:0016491
Vra10g0772 377 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 331 339 IPR001709 GO:0016491
Vra10g0772 377 Pfam Oxidoreductase NAD-binding domain 231 345 IPR001433 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0772 Vra-Chr10 13749431 13753339 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0772 K02641 - gmx:100807968 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0772 10 13749431 13753339 Vra10g0772 10 13749431 13753339 ECH