Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0754 ATGCAAAATGCTGCCATTAAAAGCGTGAACGTTAGCAGTTTGAAGACTGGGAGTGCACAGCAAAAGAAAAGCAAGAAGACAGATAGAAGAAGCAATTTCGGAAAGAGGTTTTTGTCATCTTGCATGGAATTTCAATCCCCAACTTCTCGCCCTACCAGGAGTGATGTCGTTTTGAACCACCATCCACCATTTCCGATCATTCACCAGTTTCTGTTGCCGCCGCCGCCGCTGCCAACACCCTCCACGGTGCTGCTTCCGGTACCTTTCAACCCCTCACTTTTCTTCACGATGGATAATCAAAGGTCCATCTCTCTGCTTCAGTTCATGGTCGATGAAGGACTTGTTCCGTCTGTAGAAGAGGAAGATAAACGAAAAAGTGTTATTCGGAAGCTTAAACAGGTAGTCTCATCGTGGATCAAGAAGGTAGCATGCCTGCATCAACTACCAGACCACCAAATTGCTGTAACATCTGCCACGGTATTGACTTATGGATCTTATGGCCTCGGAGTTCACAGTTCAGGTTCTGACATTGATGCTTTGTGTGTTGCTCCTTTCTTTGCGTCAATTGCCGAAGACTTTTTTATTGTGTTGCACGACATGCTTAAAAGAAGACCTGAAGTATCATATATTCACTGTGTCAAGAGTGCAAAAGTCCCTTTAATGCGATTTAAATTTGAAGGGGTTTCCATTGATCTTCCATATGCTCGGCTTAACGTACTATATGTTCCCGAGAATGTTGATATATTAAATCCGTTTTTCATGAGGAATATTGATGATACCAGCTGGAAAAGTTTGTCTGGGGTGCGAGCAAATAAATACATTCTTCATCTAGTTCCTAATATAGAGAAATTTCAATGCATTCTACGATGTCTTAAACTGTGGGCAAAAAGGCGAGGAGTTTATGGAACTTTGCTTGGTTATTTGGGAGGAGTTCATATGACAGTTCTTGCAGCATATGTTTTTCTGAGACACCCTGATGCCACCTTAAACGCTCTAATTATGCACTTTTTTCAAACATTTGCGTTTTGGCCCTGGCCTACTCCAGTGATGTTGCAGGAAGGAATGTTAACAGTTATAGACGGGATAGAGACACGGTCCTACATGCCTATATTTCTGCCATCTAGCCGTTATGAGCATTGTCATACAAGTATTACTAAAAGCACTTTCTTTCGGATCAGGAGTGAGTTTCTTCGGGGACACGAAATGACAAAGGATATTTTGAAGCCAGATTTCCTCTGGGATAATGTATTCGAGCCTTTTCCTTACACAGAAAGATACTCCCGGTTTCTCAAAATTTGTCTCTCTTCTCCTAACCATTATGCACTCGTAGAATGGGTTGGCTGGGTAAAGTCACGCTTTCGAGGTCTTCTTCTGCATCTGGAGGCTACTCAAGGATTTTGTGACCCTAACCCTACAGAATATGTTGATAGTGAGAAAACGGAGCCAAATGTAATTTTCTATTGGGGTTTGAAATCTAACAAAAATAATTTCCTGGACATCGATTCGGTAAAGGGGGAGTTTATGAAAATTATAAAGAATGGCTACGAAGGTTCTCCTGGGAGGATGGAGATGTCCATCCTGTTAGCTTCTCAGCTGCCAAATTGA 1605 0.4212 MQNAAIKSVNVSSLKTGSAQQKKSKKTDRRSNFGKRFLSSCMEFQSPTSRPTRSDVVLNHHPPFPIIHQFLLPPPPLPTPSTVLLPVPFNPSLFFTMDNQRSISLLQFMVDEGLVPSVEEEDKRKSVIRKLKQVVSSWIKKVACLHQLPDHQIAVTSATVLTYGSYGLGVHSSGSDIDALCVAPFFASIAEDFFIVLHDMLKRRPEVSYIHCVKSAKVPLMRFKFEGVSIDLPYARLNVLYVPENVDILNPFFMRNIDDTSWKSLSGVRANKYILHLVPNIEKFQCILRCLKLWAKRRGVYGTLLGYLGGVHMTVLAAYVFLRHPDATLNALIMHFFQTFAFWPWPTPVMLQEGMLTVIDGIETRSYMPIFLPSSRYEHCHTSITKSTFFRIRSEFLRGHEMTKDILKPDFLWDNVFEPFPYTERYSRFLKICLSSPNHYALVEWVGWVKSRFRGLLLHLEATQGFCDPNPTEYVDSEKTEPNVIFYWGLKSNKNNFLDIDSVKGEFMKIIKNGYEGSPGRMEMSILLASQLPN* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0754 534 PANTHER NUCLEAR POLY(A) POLYMERASE 3 87 534 - -
Vra10g0754 534 MobiDBLite consensus disorder prediction 1 20 - -
Vra10g0754 534 Gene3D - 97 417 - -
Vra10g0754 534 Gene3D Beta Polymerase, domain 2 116 272 IPR043519 -
Vra10g0754 534 PANTHER POLY A POLYMERASE 87 534 - -
Vra10g0754 534 Gene3D Poly(A) polymerase predicted RNA binding domain 421 528 - -
Vra10g0754 534 CDD NT_PAP_TUTase 123 238 - -
Vra10g0754 534 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 420 532 IPR011068 GO:0003723|GO:0016779|GO:0031123
Vra10g0754 534 Pfam Nucleotidyltransferase domain 157 192 IPR002934 GO:0016779
Vra10g0754 534 SUPERFAMILY Nucleotidyltransferase 88 275 IPR043519 -
Vra10g0754 534 SUPERFAMILY PAP/OAS1 substrate-binding domain 279 419 - -
Vra10g0754 534 MobiDBLite consensus disorder prediction 1 32 - -
Vra10g0754 534 Pfam Poly(A) polymerase central domain 97 419 IPR007012 GO:0004652|GO:0043631
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0754 Vra-Chr10 13608852 13614009 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0754 K14376 - qsu:112002927 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0754 10 13608852 13614009 Vra10g0754 10 13608852 13614009 ECH