Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0741 ATGGTGAAGGTGCGAATGAACACCGCCGATGTAGCCGCCGAGGTCAAATGCCTCCGGCGCTTCATTGGAATGCGGTGCTCCAACGTCTACGATCTTTCTCCCAAGACCTACGTGTTTAAGCTGATGAACAGCAGTGGAGTTTCGGAATCTGGGGAGAGCGAGAAGGTTCTACTGCTCATGGAGAGTGGCGTGAGATTGCATTCTACTATCTACATGCGTGACAAGAGCAACACACCTTCTGGTTTCACTCTCAAATTGAGGAAGCATATTCGTACGAGGAGGCTCGAGGATGTGCGCCAACTTGGGTACGATCGGATTATTCTTTTCCAATTTGGACTTGGGGAGAATGCGAACTATGTTATATTGGAGTTGTATGCTCAAGGGAATATCCTCCTCACGGATTCTAGTTTTACGGTCATGACTCTGCTGCGGTCTCACAGGGACGATGATAAAGGGCTTGCAATTATGTCACGTCATCGTTATCCTGTTGAAAGTTGTAGAGTTTTTGAGCGGACTACTATTGAAAAGTTGTGGGCATCTCTGGTGTCTTCCAAGGAAGATGATAGTGATGAGACTGTTAAGGTCAATGGAAATGGAAATAATGCTTCTAGTGTAGCAAAAGAGAAGCAGGGAACCCAAAAAGGTGGTAAGATATCAACACTGAAAGTTGTCCTTGGGGAGGCACTTGGTTATGGACCTGCACTTTCTGAACATATAATATTAGATGCTGGCCTAATTCCAAGTACAAAAGTTCCCAAAGATAAAACGTGGGATAATGCTACTATTCAGGCTTTGGTCCAAGCTGTTGTGAAGTTTGAAGATTGGATGCAGGATGTTATTTCAGGTGAAGTAGTCCCTGAAGGATACATTGTGATGCAGAACAAAAATTTGGGGAACAATTCTTCAATATCTCAGCCTGGAAGTGTTAGCCAGATGTATGATGAGTTCTGCCCCATCTTACTCAACCAGTTTAAGTCAAGGGATTATACAAAATTTGAGACATTTGATGCAGCCTTAGATGAGTTCTACAGCAAAATTGAGAGTCAAAGAGCTGAACAGCAGCAGAAAGCCAAAGAAAACACAGCTGCTCAGAAACTTAATAAGATTCGCCAGGATCAGGAAAATCGAGTACATGCTTTGAGGAAAGAAGCTGATCAATGCGTTAAGATGGCAGAATTGATAGAATATAACTTGGAAGATGTGGATGCTGCTATATTAGCTGTTCGAGTAGCTCTAGCAAAAGGTATGAACTGGGATGACCTTGCTCGGATGGTAAAGGAAGAAAAGAAAGCTGGAAATCCAGTAGCTGGCCTCATCGACAAGCTCCATCTTGAGAGGAACTGCATGACTTTATTTTTAAGCAACAATCTTGATGAGATGGATGATGATGAGAAGACACTCCCTGTGGATAAGGTTGAAGTTGATTTAGCTCTTTCAGCACATGCCAATGCTCGGAGGTGGTATGAACAGAAGAAAAAGCAGGAGAGCAAACAGGAAAAAACTGTAACTGCCCATGAAAAGGCTTTTAAAGCTGCAGAAAGAAAGACTCGCCTACAGCTTAATCAGGAAAAAACTGTTGCCTCAATTTCACATATGCGCAAAGTCCACTGGTTTGAGAAATTTAATTGGTTCATTACCAGTGAGAACTATTTGGTTATCAGTGGACGTGATGCACAGCAAAATGAGCTGATAGTAAAGCGGTATATGTCAAAAGGAGACCTGTATGTACATGCTGATCTGCATGGAGCTTCTAGTACTGTTATCAAGAATCACAAGCCTGTTCAGCCAGTTCCACCACTGACCCTAAACCAAGCAGGATGTTTCACAGTCTGCCATAGCCAGGCATGGGATTCAAAAATTGTTACCAGTGCCTGGTGGGTTTTTCCTCATCAGGTTAGTAAAACAGCTCCTACAGGTGAATATCTGACAGTAGGGAGTTTCATGATCCGGGGAAAGAAAAATTTTCTTCCACCACACCCTCTTATCATGGGTTTTGGCCTACTGTTTCGCTTGGATGAGAGTTCATTAGGATCACATTTAAATGAACGAAGAGTGAGAGGAGAGGAGGAAGCAACAGATGATTATGAAAATGCTAATCTCGAAGACAAATCTGATTCAGAATCTGAGAAGGATGTCGCCGATATAAAATCTGTCACCGACTCAGAAATGAATGGTAAATTGTCTGCAGATTCACACAAACCCCTATCAGAAGACTTTTCCAAAGATTCATCTCAAACTGATTTGGCTACTATCAGTTCCAAAAAGGAAATTTCACGTGATTTTCCTGTGAAAGAGACAAGTACATCAAATATGGTTGACAGGGAGATATTATCAGATACTAGCAGAGATGGCTTAGTTGCTGTTCCCCCTCAACTTGAGGAACTTATTGACCAAGCTCTGGAACTTGGATCTGTTGCTAAACCAAGTAAGCTTTATGGAACTGAGAACTATCAAATTGATTTAGGCAGTGACAAACATTTGGAACAAAGCAAAGCAGCAGTTAGGGATAAACCTTACATATCAAAAGCTGAGAGACGAAAGCTTAAAAAAGAACAGAAACTTGAAGATACAGATTCAAATGTTGAACATGGTAAGGATGAACCGAAACTGAAAGATATTTCTGCAAATCTACCTGCAAAGGAAGATCAAAATGTGAAAAAAGGTGGTGGTCAAAAAATAAGCCGTGGGCAGAAGGGAAAATTGAAAAAGATAAAGGAGAAGTATGCTGACCAGGATGAGGAAGAACGGAACATCCGAATGGCGTTGTTGGCTTCTTCTGGAAAATCAATCAAGAAGGAAGAGAAATCATCTGAAAATGATGCATTAGACAAAGGGAAAAAATCTGGCAACGGTCCTGTTGAAGCCCCAAAAATATGTTACAAGTGTAAAAAGCCAGGTCACTTGTCTCGGGATTGTAAGGAACAGTCAGATGATCCGGTGCATAGGAATGCAATTGGTGAAGCTGAAGAAAATCCCAAAATGACTGATATTGAAACTTCCCAAGCAGACAGGGTGACAATGGAAGAAGATGATATTCATGAAATAGGAGAAGAAGAAAAAGAAAAACTAAATGACGTGGATTACTTGACTGGGAATCCACTTCCTAATGACATTCTCTTGTATGCTGTTCCTGTTTGTGGTCCTTACAGTGCACTTCAGTCTTACAAATATCGGGTGAAGATAATTCCTGGACCAGCGAAGAAAGGGAAAGCTGCAAAAACTGCAATGAACTTGTTCAGCCACATGTCAGAAGCAACAACCCGAGAGAAGGAGTTGATGAAGGCCTGTACAGATCCTGAGCTAGTTGCTGCAATTATTGGTAATGTGAAAATATCAGCAGCCGGCCTAACTCAATTGAAGCAAAAGCAAAAGAAAAGCAAAAAGAGCAGCAAACAAGCTTGA 3402 0.4171 MVKVRMNTADVAAEVKCLRRFIGMRCSNVYDLSPKTYVFKLMNSSGVSESGESEKVLLLMESGVRLHSTIYMRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGENANYVILELYAQGNILLTDSSFTVMTLLRSHRDDDKGLAIMSRHRYPVESCRVFERTTIEKLWASLVSSKEDDSDETVKVNGNGNNASSVAKEKQGTQKGGKISTLKVVLGEALGYGPALSEHIILDAGLIPSTKVPKDKTWDNATIQALVQAVVKFEDWMQDVISGEVVPEGYIVMQNKNLGNNSSISQPGSVSQMYDEFCPILLNQFKSRDYTKFETFDAALDEFYSKIESQRAEQQQKAKENTAAQKLNKIRQDQENRVHALRKEADQCVKMAELIEYNLEDVDAAILAVRVALAKGMNWDDLARMVKEEKKAGNPVAGLIDKLHLERNCMTLFLSNNLDEMDDDEKTLPVDKVEVDLALSAHANARRWYEQKKKQESKQEKTVTAHEKAFKAAERKTRLQLNQEKTVASISHMRKVHWFEKFNWFITSENYLVISGRDAQQNELIVKRYMSKGDLYVHADLHGASSTVIKNHKPVQPVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVFPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEEATDDYENANLEDKSDSESEKDVADIKSVTDSEMNGKLSADSHKPLSEDFSKDSSQTDLATISSKKEISRDFPVKETSTSNMVDREILSDTSRDGLVAVPPQLEELIDQALELGSVAKPSKLYGTENYQIDLGSDKHLEQSKAAVRDKPYISKAERRKLKKEQKLEDTDSNVEHGKDEPKLKDISANLPAKEDQNVKKGGGQKISRGQKGKLKKIKEKYADQDEEERNIRMALLASSGKSIKKEEKSSENDALDKGKKSGNGPVEAPKICYKCKKPGHLSRDCKEQSDDPVHRNAIGEAEENPKMTDIETSQADRVTMEEDDIHEIGEEEKEKLNDVDYLTGNPLPNDILLYAVPVCGPYSALQSYKYRVKIIPGPAKKGKAAKTAMNLFSHMSEATTREKELMKACTDPELVAAIIGNVKISAAGLTQLKQKQKKSKKSSKQA* 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0741 1133 MobiDBLite consensus disorder prediction 928 951 - -
Vra10g0741 1133 Coils Coil 363 383 - -
Vra10g0741 1133 SUPERFAMILY Retrovirus zinc finger-like domains 948 976 IPR036875 GO:0003676|GO:0008270
Vra10g0741 1133 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 3 1122 - -
Vra10g0741 1133 MobiDBLite consensus disorder prediction 680 750 - -
Vra10g0741 1133 MobiDBLite consensus disorder prediction 829 915 - -
Vra10g0741 1133 Pfam NFACT N-terminal and middle domains 220 523 - -
Vra10g0741 1133 Pfam NFACT N-terminal and middle domains 10 189 - -
Vra10g0741 1133 Pfam NFACT protein RNA binding domain 540 651 IPR008532 -
Vra10g0741 1133 MobiDBLite consensus disorder prediction 829 876 - -
Vra10g0741 1133 ProSiteProfiles Zinc finger CCHC-type profile. 959 974 IPR001878 GO:0003676|GO:0008270
Vra10g0741 1133 Pfam NFACT protein C-terminal domain 1019 1112 IPR021846 -
Vra10g0741 1133 SMART c2hcfinal6 958 974 IPR001878 GO:0003676|GO:0008270
Vra10g0741 1133 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
Vra10g0741 1133 MobiDBLite consensus disorder prediction 928 947 - -
Vra10g0741 1133 MobiDBLite consensus disorder prediction 189 211 - -
Vra10g0741 1133 Gene3D - 954 1007 - -
Vra10g0741 1133 Coils Coil 840 860 - -
Vra10g0741 1133 Pfam Zinc knuckle 958 974 IPR001878 GO:0003676|GO:0008270
Vra10g0741 1133 PANTHER - 3 1122 - -
Vra10g0741 1133 MobiDBLite consensus disorder prediction 194 211 - -
Vra10g0741 1133 MobiDBLite consensus disorder prediction 680 717 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0741 K24971 - gmx:100807437 1929.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0741 10 13435250 13445405 Vra10g0741 10 13435250 13445405 ECH