Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0740 ATGCCGATGGCGATGACCGCGTCGCAGTTGCGGTGGGGATGGAGGCCGCCGCCGAAGCAGCAACGGCGTCGTATGGCTCCTGTGGTCTGTTCAGTGGCTATAGAGAACGCGCAGAAGAAAGAGAGAGCGAGACTAAAAAAGCTTTTCGAAGAAGCGTACGAGAGGTGCCGCACTGCTCCCACCGAAGGCGTCTCTTTCACTCTCCAGCAATTCACCGACGCTCTCGACAAGTATGACTACGAATCCGAAGTTGGCACTAAGGTTAAGGGCACTGTTTTTGCCACAGATGGAGGTGGAGCTTATGTTGACATTACTGCAAAGTCCGCAGCCTACTTGCCCCTGCAAGAGGCTTGCATTAGCAAAATTAAGAAAGTTGAAGAAGCAGGTATAGTTCCTGGGTTGAGGGAGGAATTTATGATCATTGGTGAGAATGGAACGGATGATACATTGATCCTGAGTTTGAGGTCTATCCAATATGACCTTGCATGGGAGCGCTGTAGACAACTGCAGGCTGAAGATGCTGTTGTCAAGGGTAAGGTTGTCAGTGCAAACAAAGGCGGTTTGGTGGCTCAAGTGGAAGGCCTCAAGGGGTTTGTTCCATTTTCACAGATATCAGCGAAATCAACTGGAGAAGAGCTTCTTGAGCAGGAGATTTCTTTTAAGTTTGTGGAGGTGGATGAGGAACAGTCTAGACTTGTCCTCAGTCACCGCAAAGCTGTGGCTGAGAGCCAAGGACAGTTAGGAATTGGATCAGTAGTCATTGGCTCTGTTCAAAGCATAAAGCCATACGGTGCCTTCGTTGACATTGGTGGAATCAGTGGCCTCCTTCATGTCAGTCAGATCAGTCATGACCGTATAACTGACATTACGACTGTTCTTCAACCTGGTGATATTCTGAAGGTGATGATCTTAAGTCATGATCGGCAGAGAGGACGTGTAAGTCTTTCCACAAAGAAGTTGGAACCCTCACCTGGTGACATGATTCGCAACCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATCGCACAAGCAGAAGCTATGGCTCGTGCTGATATGCTCAGGTTCCAGCCAGAGGGTGGATTAAGTCTCAGCGGTGAGGGAATCTTAGGACCACTTTCTTCAGACTTGCCTCCAGAGGGAGTGAATCTGAGTGAGGTACCCCTGGCTGAAGAGTCATGA 1203 0.4929 MPMAMTASQLRWGWRPPPKQQRRRMAPVVCSVAIENAQKKERARLKKLFEEAYERCRTAPTEGVSFTLQQFTDALDKYDYESEVGTKVKGTVFATDGGGAYVDITAKSAAYLPLQEACISKIKKVEEAGIVPGLREEFMIIGENGTDDTLILSLRSIQYDLAWERCRQLQAEDAVVKGKVVSANKGGLVAQVEGLKGFVPFSQISAKSTGEELLEQEISFKFVEVDEEQSRLVLSHRKAVAESQGQLGIGSVVIGSVQSIKPYGAFVDIGGISGLLHVSQISHDRITDITTVLQPGDILKVMILSHDRQRGRVSLSTKKLEPSPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPEGGLSLSGEGILGPLSSDLPPEGVNLSEVPLAEES* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0740 400 CDD S1_RPS1_repeat_hs4 250 318 - -
Vra10g0740 400 SUPERFAMILY Nucleic acid-binding proteins 249 328 IPR012340 -
Vra10g0740 400 PANTHER 30S RIBOSOMAL PROTEIN S1 25 400 - -
Vra10g0740 400 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 25 400 - -
Vra10g0740 400 Pfam S1 RNA binding domain 171 237 IPR003029 GO:0003676
Vra10g0740 400 Pfam S1 RNA binding domain 249 318 IPR003029 GO:0003676
Vra10g0740 400 Coils Coil 335 355 - -
Vra10g0740 400 CDD S1_RPS1_repeat_ec2_hs2 173 237 - -
Vra10g0740 400 Gene3D - 246 326 IPR012340 -
Vra10g0740 400 ProSiteProfiles S1 domain profile. 85 155 IPR003029 GO:0003676
Vra10g0740 400 ProSiteProfiles S1 domain profile. 250 318 IPR003029 GO:0003676
Vra10g0740 400 Gene3D - 68 165 IPR012340 -
Vra10g0740 400 Gene3D - 166 245 IPR012340 -
Vra10g0740 400 SMART S1_6 83 155 IPR022967 -
Vra10g0740 400 SMART S1_6 248 318 IPR022967 -
Vra10g0740 400 SMART S1_6 171 237 IPR022967 -
Vra10g0740 400 SUPERFAMILY Nucleic acid-binding proteins 168 241 IPR012340 -
Vra10g0740 400 MobiDBLite consensus disorder prediction 378 400 - -
Vra10g0740 400 ProSiteProfiles S1 domain profile. 173 237 IPR003029 GO:0003676
Vra10g0740 400 SUPERFAMILY Nucleic acid-binding proteins 73 181 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0740 Vra-Chr10 13429755 13434025 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0740 K02945 - gmx:100806905 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0740 10 13429755 13434025 Vra10g0740 10 13429755 13434025 ECH
Vra7g2739 7 47667811 47671113 Vra10g0740 10 13429755 13434025 PCT