Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0167 ATGACTCTTTTGAGGTTTGTGGATGAAGAAAGTGGTCAAAGTATAGGAGCATTCACTTGGTTTGCAACACATGGAACTTCCATGAGCAATAAAAACAAGCTCATTACTGGCGATAACAAGGGTGTTGCAGCAAGACTTTTTGAAGATTGGTTTGCTTCTCAAAACACATCTTCAACCACCAACTCTTCAGTACCAGATGTTGGGCAACTAGTGAAGATGGCACAATCAATTAAGGCCACAGGAGGAAAAGACTGCAGCAAACAAGCAAGCCAAGCATCCAAGGTGAGGAAGAATGATGGATCCTTATTTGTTGCAGCATTTTGCCAATCAAATGTTGGAGATGTGTCGCCAAATGTTTTAGGAGCATTTTGCATTGACACTGGAAAGCCTTGTGATTTCAACCATTCTTCATGCAATGGCAATGACCAACTTTGTGTAGGCAGAGGACCAGGGTACCCAGATGAAATATTAAGTACCAAGATCATAGGTGAAAGACAATTCAAAAGTGCTGTGGAATTGTTTCAGTCAGCTTCAGAGGAAGTGAAAGGGAAGATTGAGTACTTTCATGTGTACCTTAACTTCACAGACATTGAAGTTGAATTGGAGAGTAATAAGGTGGTTAAAACTTGTCCTGCAGCACTAGGTCCTGGTTTTGCAGCAGGCACTACAGATGGGCCAGGTGCTTTTGGGTTTCAACAAGGAGATTTAAAGATTAATCCATTTTGGAAGAATTTGAGGGATTTCCTCAAAGAACCAAGTCAATATCAAGTGGACTGCCAAAACCCAAAGCCAGTTTTGCTGAGCACCGGCGAAATGTTTGATCCTTATGCTTGGGCGCCAGCAATTCTTCCAATTCAAATCCTAAGATTGGGAAAGTTGATCATTCTTTCTGTACCAGGAGAGTTTACAACAATGGCTGGCAGAAGGCTAAGGGAGGCAGTGAAGGAGATATTAATATCTAGCAGCAATGGAGAATTCAATGACAAAACACATGTGGTTATAGCAGGACTTACAAATACTTACTCACAATACATTGCTACTTTTGAAGAATATCAGCACCAACGGTACGAGGCTGCTTCAACACTGTATGGTCCTCACACATTGTCAGCATACATCCAAGAATTTAAGAAACTAGCACAAGCAATGGCTGAAGGACAGAACATCACTACAAAAGGTCCCTCTCCACCAGATCTCTCATCTGTACAAATAAGTCTATTACTTGGTCCGGTTGGAGACTCACCTCCTGAAGGAATCGAATTTGGTGACATAAAAGAAGACATAGCCTTTCCAGAAAGAGGCTATTTTAGGAAGGGAGATACACCAAGTGCTACATTCTGGAGTTCTAATCCAAGATATGATCTTCTGACAGAGGGCACATTTGCTGCAGTGGAGAGGCTGCAAGGGGAAAGANGGATTGCTACATATGATGATGATGATTTAAGCTTGTTTTTCAAGTGGAAAGTAGATAATAGTTCCATGCATGGATTAGCTACAATAGAATGGGAAATACCATTTGGTTCTGTTTCTGGAGTATACAGATTAAGACACTTTGGAGCAACAAGGATCACCATTACCTCCCCTATTAGTTACTTCACTGGTGCTTCAAGTGCATTTGCAGTGCAGTAA 1626 0.4139 MTLLRFVDEESGQSIGAFTWFATHGTSMSNKNKLITGDNKGVAARLFEDWFASQNTSSTTNSSVPDVGQLVKMAQSIKATGGKDCSKQASQASKVRKNDGSLFVAAFCQSNVGDVSPNVLGAFCIDTGKPCDFNHSSCNGNDQLCVGRGPGYPDEILSTKIIGERQFKSAVELFQSASEEVKGKIEYFHVYLNFTDIEVELESNKVVKTCPAALGPGFAAGTTDGPGAFGFQQGDLKINPFWKNLRDFLKEPSQYQVDCQNPKPVLLSTGEMFDPYAWAPAILPIQILRLGKLIILSVPGEFTTMAGRRLREAVKEILISSSNGEFNDKTHVVIAGLTNTYSQYIATFEEYQHQRYEAASTLYGPHTLSAYIQEFKKLAQAMAEGQNITTKGPSPPDLSSVQISLLLGPVGDSPPEGIEFGDIKEDIAFPERGYFRKGDTPSATFWSSNPRYDLLTEGTFAAVERLQGERXIATYDDDDLSLFFKWKVDNSSMHGLATIEWEIPFGSVSGVYRLRHFGATRITITSPISYFTGASSAFAVQ* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0167 541 Gene3D - 409 541 IPR038445 -
Vra10g0167 541 Pfam Neutral/alkaline non-lysosomal ceramidase, N-terminal 1 373 IPR031329 -
Vra10g0167 541 PANTHER NEUTRAL CERAMIDASE 1 541 - -
Vra10g0167 541 PANTHER CERAMIDASE 1 541 IPR006823 GO:0017040|GO:0046514
Vra10g0167 541 Pfam Neutral/alkaline non-lysosomal ceramidase, C-terminal 375 540 IPR031331 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0167 Vra-Chr10 4579780 4588658 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0167 K12349 - gmx:100793262 964.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0142 6 1009257 1010292 Vra10g0167 10 4579780 4588658 PCT