Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04653 ATGTTCCAACATTTCACTACTTGTTTTCCCTTCCTTCACAACACCAAACCTCTCTTCAACAAACCAAAAACACAATCCAACAACAAACTATCTTCCACTTCCGACATATCAATCTCATCATTCATCCACAACGAAGTCTCCGGCCAATTCAGACAAGTTTTCAAACTCATAGACACAAACAACGACGGAAAGATCTCAACAACCGAACTCACTCAACTCCTTTCATGTCTAGGATACAACACCTACACAGCCGCCAAAGAAGCCGAAAGCATGATACGAGTTTTGGACTTCAATGGAGATGGATTTGTAGACATTGATGAGTTCATGTTTGTGATGAGAGAAGAGAATTATGGCAAAGGAAAAGAGTGTGATGTTGATGAGTATTTAATGGATGCTTTTCTTGTGTTTGATAGTGATAAGAATGGATTGATATCACCTAAGGAGTTGAGGAGAGTTTTGGTTAATCTTGGATGTGAGAATTGTAGTTTGAGGGAGTGTAAACGGATGATTAAAGGGGTTGATAAAAATGGAGATGGGTTTGTTGATTTTGAAGAGTTTAAATCTATGATGAAAATTGGACTTCAAATTTAG 591 0.3773 MFQHFTTCFPFLHNTKPLFNKPKTQSNNKLSSTSDISISSFIHNEVSGQFRQVFKLIDTNNDGKISTTELTQLLSCLGYNTYTAAKEAESMIRVLDFNGDGFVDIDEFMFVMREENYGKGKECDVDEYLMDAFLVFDSDKNGLISPKELRRVLVNLGCENCSLRECKRMIKGVDKNGDGFVDFEEFKSMMKIGLQI 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04653 196 ProSitePatterns EF-hand calcium-binding domain. 58 70 IPR018247 -
Vivi7g04653 196 SMART efh_1 165 193 IPR002048 GO:0005509
Vivi7g04653 196 SMART efh_1 128 156 IPR002048 GO:0005509
Vivi7g04653 196 SMART efh_1 49 77 IPR002048 GO:0005509
Vivi7g04653 196 SMART efh_1 87 115 IPR002048 GO:0005509
Vivi7g04653 196 ProSiteProfiles EF-hand calcium-binding domain profile. 161 196 IPR002048 GO:0005509
Vivi7g04653 196 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Vivi7g04653 196 ProSiteProfiles EF-hand calcium-binding domain profile. 45 80 IPR002048 GO:0005509
Vivi7g04653 196 ProSiteProfiles EF-hand calcium-binding domain profile. 124 159 IPR002048 GO:0005509
Vivi7g04653 196 Gene3D - 15 121 - -
Vivi7g04653 196 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Vivi7g04653 196 SUPERFAMILY EF-hand 38 191 IPR011992 -
Vivi7g04653 196 ProSitePatterns EF-hand calcium-binding domain. 174 186 IPR018247 -
Vivi7g04653 196 CDD EFh 128 191 IPR002048 GO:0005509
Vivi7g04653 196 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 124 191 - -
Vivi7g04653 196 CDD EFh 49 113 IPR002048 GO:0005509
Vivi7g04653 196 ProSitePatterns EF-hand calcium-binding domain. 137 149 IPR018247 -
Vivi7g04653 196 Pfam EF-hand domain pair 50 113 IPR002048 GO:0005509
Vivi7g04653 196 Pfam EF-hand domain pair 127 191 IPR002048 GO:0005509
Vivi7g04653 196 FunFam Calmodulin 1 39 193 - -
Vivi7g04653 196 Gene3D - 122 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04653 Vivi-Chr7 118611923 118612914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04653 129 194 EF-hand Containing Proteins AT1G24620 36.364 7.88e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04653 - - tpra:123897853 328.946