Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04619 ATGGGTTTGATTTCTGGGATTTTTATGGGGATGGTGTTTGGCATAGCATTGATGGCTGGATGGGCTCGGATGATGAGATACAGAAGTGCTAGGAGAATTGCAAAGGCTGTTGACATCAAACTCCTTGGATCCCTCAACAGAGATGATTTGAAGAAAATTTGCGGTGAAAATCTTCCCGAATGGATATCTTTCCCTGTATATGAGCAGGTGAAATGGCTAAACAAGCTCTTGAGCAAACTCTGGCCATTTGTGGCAGAAGCCGCAACGTTAGTTATCAGGGAGTCGGTTGAACCTCTACTGGAAGAGTACCGACCTCCCGGAATTACTTCATTGAAGTTCAGCAAGCTGTCACTTGGAAACGTAGCTCCAAAAGTTGAAGGTATTCGTGTGCAGAGTCTTACCAAAGGTCAAATCATAATGGACATAGACTTTCGTTGGGGTGGTGATCCCAGTATTATTTTGGCCGTTGAAGCTGCCCTTGTTGCATCAATTCCTATTCAATTGAAGGATCTAAAAGTTTTCACAATTATCCGTGTTATATTCCAACTTGCTGAAGAGATCCCTTGTATTTCTGCGGTTGTTGTTGCTCTACTGGCTGAGCCGAAGCCAAAAATTGATTATACTCTGAAAGCTGTTGGTGGAAGCTTAACTGCTCTTCCTGGAGTTTCAGATATGATTGAGGATACTGTGAACGCAATTGTTACTGATACGCTCCAATGGCCACATAGGATCGTTGTTCCACTCGGCGGTATCCCTGTCGATATTAGTGAACTGGAGCTTAAACCTCAAGGAAGACTTGAGGTGACTATAGTGAAAGCAACCGATTTAAAGAACAAGGAAATGATTGGAAAATCAGATCCTTACGTAGTTTTGTATATCCGACCCTTATTTAAAGTTAAAACCAAGGTCATTAACAACAACTTGAATCCTGTTTGGGATCAAACATTTGAATTGATTGCAGAAGACAAGGAGACTCAGTCTGTGATTTTTGAGGTTTTTGATGAAGACATTGGACAAGATAAGCGATTGGGAATTGTGAAACTACCTCTTAATGATCTGGAAGTACAAACTGAAAAGGAGTTTCAATTGGGACTGCTGTCATCGCTCGATACACTCAAGGTTAAAGATAAGAAGGATCGGGGAACCTTGACTATAAAGGTTATGTATTACCAGTTTAACAAGGAGGAGCAATTGGCGGCACTAGAAGCGGAAAAAGCTATATTAGAAGAAAGGAAGAAAATGAAAGCGGCCGGCGTGATAGGTAGCACAATGGATGCGCTGGACGGAGCAGTGTCGGTGGTGGGATCTGGTGCTGGACTTGTTGGAAGTGGCATTGGCGCAGGAGCTGGACTTGTCACGAGTGGTCTTGGCACGTTCACCAGCGGTCTTACCAAGGCGGGAAAGTTTATGGGAAGAACCATAACAGGTCATCATAGTGGGTCGAGAAGGAGTGGCTCGTCTACTCCGGTTCATAATGCAGCGGAAAATGGCGGTGGTGCAAAGCCTCAATAG 1512 0.4385 MGLISGIFMGMVFGIALMAGWARMMRYRSARRIAKAVDIKLLGSLNRDDLKKICGENLPEWISFPVYEQVKWLNKLLSKLWPFVAEAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKVEGIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAALVASIPIQLKDLKVFTIIRVIFQLAEEIPCISAVVVALLAEPKPKIDYTLKAVGGSLTALPGVSDMIEDTVNAIVTDTLQWPHRIVVPLGGIPVDISELELKPQGRLEVTIVKATDLKNKEMIGKSDPYVVLYIRPLFKVKTKVINNNLNPVWDQTFELIAEDKETQSVIFEVFDEDIGQDKRLGIVKLPLNDLEVQTEKEFQLGLLSSLDTLKVKDKKDRGTLTIKVMYYQFNKEEQLAALEAEKAILEERKKMKAAGVIGSTMDALDGAVSVVGSGAGLVGSGIGAGAGLVTSGLGTFTSGLTKAGKFMGRTITGHHSGSRRSGSSTPVHNAAENGGGAKPQ 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04619 503 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
Vivi7g04619 503 PRINTS C2 domain signature 328 336 IPR000008 -
Vivi7g04619 503 PRINTS C2 domain signature 306 319 IPR000008 -
Vivi7g04619 503 PRINTS C2 domain signature 281 293 IPR000008 -
Vivi7g04619 503 Coils Coil 391 411 - -
Vivi7g04619 503 CDD SMP_SYT 59 248 - -
Vivi7g04619 503 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Vivi7g04619 503 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 262 392 IPR035892 -
Vivi7g04619 503 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 432 IPR045050 GO:0008289
Vivi7g04619 503 Gene3D C2 domain 259 417 IPR035892 -
Vivi7g04619 503 SMART C2_3c 265 362 IPR000008 -
Vivi7g04619 503 MobiDBLite consensus disorder prediction 477 493 - -
Vivi7g04619 503 MobiDBLite consensus disorder prediction 471 503 - -
Vivi7g04619 503 Pfam C2 domain 264 360 IPR000008 -
Vivi7g04619 503 ProSiteProfiles C2 domain profile. 247 363 IPR000008 -
Vivi7g04619 503 FunFam synaptotagmin-4 isoform X1 259 417 - -
Vivi7g04619 503 CDD C2 266 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04619 Vivi-Chr7 117997896 118002863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04619 266 354 Lipid Metabolism Gene Families AT4G00700 39.326 1.98e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04619 - - tpra:123895719 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04619 7 117997896 118002863 Vivi7g04619 7 117997896 118002863 ECH
Vivi7g04619 7 117997896 118002863 Vivi7g04619 7 117997896 118002863 PCT