LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi7g04371	ATGGGAAGTGAGAGTTATCAACTTTTGTCCAAGATTGCAACCAATGATCAACATGGAGAAAATTCTCCATACTTTCATGGATGGAAAGCTTATGAGAGAAATCCATTTCATCCCACACAAAATCCTCATGGTGTAATCCAAATGGGTCTTGCTGAAAATCAGCTTTGTTTTGATTTGATTGAAGAATGGATAAAGAATAATCCCAAGGCTTCAATTCGCACTCTTGAAGGAGTGAATAAATTCAGAGATATTGCAAATTTTCAAGACTATCATGGTTTGCCAGAGTTTACAAGTGCTATGGCAAAATTTATGTCAAAAGTGAGAGGTGGAAGAGTAAGATTTGATCCAAACCGAATATTGATGAGTGGAGGGGCAACAGGAGCAAATGAAATGATAATGTTTTGCTTGGCAGATCCAGGAGATGCTTTTCTAGTTCCTACTCCTTACTATCCAGGATTCGTTCGTGACTTATGTTGGAGAACTAAGGTTCAATTAATTCCTGTCCATTGTGATAGCTCCAACAATTTCAAGATAACAAGAGAAGCACTTGAAATAGCATACAAAAAAGCAAAAGAAAACAACATCAATGTAAAAGGTTTGATCATAACAAACCCTTCCAACCCTTTAGGCACAACCCTAGACAAAGAAACCCTAAAAAGTATTGTTACTTTCATCAATGAGAAAACAATCCATTTGGTTTGTGATGAAATCTATGCAGCCACAGTTTTCACTTCACCAACCTATGTAAGTGTTAGTGAAGTCATACAAGAAATGAAGTGCAACCTTGATCTCATTCACATTATTTATAGCTTATCAAAGGATTTAGGGTTTCCGGGTTTTAGGGTTGGGATAGTTTATTCATACAATGATCAAGTTGTGAGTTGCGGAAGGAAAATGTCGAGTTTCGGATTAGTTTCATCTCAAACTCAACACATGCTTGCTTCAATGCTTTGTGATGAAAAATTTGTTGAAAAATTTCTCTTGGAGAGTTCGAGAAGGTTGTCGAAAAGGCATGAGAAATTTACAAAGGGACTCGAGGAGGTTAACATCAGTCGATTTCCAAGTAATGCGGGACTATTCTGTTGGATGAACTTAAAGAGTTTGCTTAAAGAGGAAACAATAGAAGAAGAGTTGAAGCTTTGGCATGTGATTATTAATGAGGTTAAGCTTAATGTGTCACCGGGGTCTTCTTTTAATTGCTCTGAGGTTGGTTGGTTTAGGGTTTGTTTTGCTAATATTGATGATGAAACCGTGGAAGTTGCATTGAAAAGAATAAGAGTGTTTATAGGGAAAGAAACAAAGAAGAAAGTTGAACAAGTCAAACGTTGGCAACCAAATTTAAGGCTTAGTTTCACTTCAAGGAGGTTTGATGAGAATGTTTTGTCACCTCATAATCATATAAGCATCTCTCCTCATTCACCACTTGTTAGAGCCACATGA	1440	0.3681	MGSESYQLLSKIATNDQHGENSPYFHGWKAYERNPFHPTQNPHGVIQMGLAENQLCFDLIEEWIKNNPKASIRTLEGVNKFRDIANFQDYHGLPEFTSAMAKFMSKVRGGRVRFDPNRILMSGGATGANEMIMFCLADPGDAFLVPTPYYPGFVRDLCWRTKVQLIPVHCDSSNNFKITREALEIAYKKAKENNINVKGLIITNPSNPLGTTLDKETLKSIVTFINEKTIHLVCDEIYAATVFTSPTYVSVSEVIQEMKCNLDLIHIIYSLSKDLGFPGFRVGIVYSYNDQVVSCGRKMSSFGLVSSQTQHMLASMLCDEKFVEKFLLESSRRLSKRHEKFTKGLEEVNISRFPSNAGLFCWMNLKSLLKEETIEEELKLWHVIINEVKLNVSPGSSFNCSEVGWFRVCFANIDDETVEVALKRIRVFIGKETKKKVEQVKRWQPNLRLSFTSRRFDENVLSPHNHISISPHSPLVRAT	479

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi7g04371	479	ProSitePatterns	Aminotransferases class-I pyridoxal-phosphate attachment site.	270	283	IPR004838	GO:0003824\|GO:0009058\|GO:0030170
	Vivi7g04371	479	Gene3D	-	68	319	IPR015421	GO:0003824
	Vivi7g04371	479	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	48	74	-	-
	Vivi7g04371	479	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	140	161	-	-
	Vivi7g04371	479	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	118	138	-	-
	Vivi7g04371	479	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	296	319	-	-
	Vivi7g04371	479	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	81	97	-	-
	Vivi7g04371	479	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	194	218	-	-
	Vivi7g04371	479	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	264	288	-	-
	Vivi7g04371	479	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	230	253	-	-
	Vivi7g04371	479	SUPERFAMILY	PLP-dependent transferases	14	430	IPR015424	-
	Vivi7g04371	479	CDD	AAT_like	86	426	-	-
	Vivi7g04371	479	Gene3D	Aspartate Aminotransferase, domain 1	34	424	IPR015422	GO:0003824
	Vivi7g04371	479	PANTHER	BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED	9	426	-	-
	Vivi7g04371	479	Pfam	Aminotransferase class I and II	46	425	IPR004839	GO:0009058\|GO:0030170

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi7g04371	Vivi-Chr7	113561866	113565912	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi7g04371	K20772		-	gmx:100813347	789.26

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi7g04371	7	113561866	113565912	Vivi7g04371	7	113561866	113565912	ECH
	Vivi7g04371	7	113561866	113565912	Vivi7g04371	7	113561866	113565912	PCT