Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04228 ATGGAAACCAACAACAACATGAACCAAACGACCCCCGCAACCACGGAACCCGAGTTCGAAGACTTATTACCCGTGATGGCAGAGAAACTTGACGTCGAAGCCTTTGTATCCGAACTATGCAACGGTTTTAGGCTTCTTGCAGACCAAGAAATAGGTTTGATAACAAGTGAGAGCCTTAGGAGAAACTCAGCTATGCTTGGTATGGAAGGAATGAGTAAAGAAGATGCAGAAGCTATGGTTCAACAAGGTGATCTTGATGGTGATGGAAAGTTGAATGAGACTGAGTTTTGTATATTGATGGTTAGGCTTAGCCCTGAAATGATGCAAGATGCTGAAACTTGGTTGGAGAAAGCTATTGAAGAACAGCCAAGGAATTGA 378 0.4312 METNNNMNQTTPATTEPEFEDLLPVMAEKLDVEAFVSELCNGFRLLADQEIGLITSESLRRNSAMLGMEGMSKEDAEAMVQQGDLDGDGKLNETEFCILMVRLSPEMMQDAETWLEKAIEEQPRN 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04228 125 Gene3D - 16 125 - -
Vivi7g04228 125 ProSiteProfiles EF-hand calcium-binding domain profile. 71 106 IPR002048 GO:0005509
Vivi7g04228 125 PANTHER CALCIUM-BINDING PROTEIN KIC 17 122 IPR044205 GO:0005509
Vivi7g04228 125 ProSitePatterns EF-hand calcium-binding domain. 84 96 IPR018247 -
Vivi7g04228 125 Pfam EF-hand domain pair 52 102 IPR002048 GO:0005509
Vivi7g04228 125 SUPERFAMILY EF-hand 19 108 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04228 Vivi-Chr7 110494229 110494858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04228 3 125 EF-hand Containing Proteins AT2G46600 68.800 3.75e-57 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04228 K24345 - gmx:100802677 194.126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04228 7 110494229 110494858 Vivi7g04228 7 110494229 110494858 ECH