Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04178 ATGTCTTTCTCTGCAACAAAGCTCCCACACTCTCTTCTTGCGGTTCCTGTCAATTCCTCAACTCCAAGATCCAATGATAAATCAATATCTTTCTCTTCTGATCTCTTCAAACACAACCCTTCTCCTTCCTCGTTCCTTGGATCCACTCAGAAGCTTCTTCGGTTCAATTCTATCACTAAGCCGTTTCTTCATCGTCGTTCCTCATCGCCTGTTGCTGTTCTTCTGCAACAAACCTCTGATTTGCTTATTACTAAAGAGGAAGGGTTAGTGCTTTATGAAGACATGGTACTAGGAAGGTCCTTTGAAGACAAGTGTGCTGAGATGTATTATAGAGGTAAAATGTTCGGTTTCGTTCACTTGTACAACGGCCAAGAAGCCGTGTCAACTGGATTCATCAAGTATTTGAGGCAAGAAGATTGCATCGTGAGCACATACAGAGACCATGTCCACGCGTTGAGTAAAGGGGTCCCTTCTCGAGCTGTGATGAGCGAACTCTTTGGGAAGGCAACAGGATGCTGCCGAGGTCAGGGAGGTTCGATGCATATGTTCTCAAAAGAACACAACGTGCTTGGTGGTTTCGCGTTCATCGGTGAAGGAATTCCAGTGGCCACCGGTGCGGCGTTTTCCATGAAGTACAAAAGAGAGGTGTTGAATCAGGCTGATTCTGATAACGTGACATTGGCGTTTTTCGGAGATGGAACTTGTAACAACGGACAGTTCTTCGAGTGTTTGAATATGGCTGCTTTGTGGAAGTTGCCAATTGTGTTTGTGGTGGAAAATAATTTGTGGGCCATTGGGATGTCGCATCTCAGGGCAACTTCGGATCCTCAGATATGGAAAAAAGGACCAGCTTTCGGGATGCCGGGAGTTCATGTCGACGGGATGGATGTTTTGAAGGTCAGAGAGGTGGCAAAGGAGGCAATCGATAGAGCTAGAAGAGGAGAGGGACCAACTCTAGTTGAATGCGAGACTTATAGATTTAGAGGACATTCATTGGCCGATCCTGACGAGCTTCGTAACCCTGCTGAGAAGGAACACTATGCTGGTAGGGATCCCATCACTGCATTGAAGAAATACCTTTTCGAGAACAACTTAGCCAGTGAACAAGAATTGAAAACAATAGACAAGAAAATCGACGAGATCCTTGAAGAGGCCGTTGAGTTTGCCGAGAAGAGCCCTCAGCCACAGCGCAGCCAACTTCTAGAGAATGTGTTTGCCGATCCGAAAGGTTTTGGAATTGGACCGGATGGCAGGTATAGATGTGAAGATCCAAAGTTTACAGAAGGCACTGCTCATGTCTAG 1302 0.4608 MSFSATKLPHSLLAVPVNSSTPRSNDKSISFSSDLFKHNPSPSSFLGSTQKLLRFNSITKPFLHRRSSSPVAVLLQQTSDLLITKEEGLVLYEDMVLGRSFEDKCAEMYYRGKMFGFVHLYNGQEAVSTGFIKYLRQEDCIVSTYRDHVHALSKGVPSRAVMSELFGKATGCCRGQGGSMHMFSKEHNVLGGFAFIGEGIPVATGAAFSMKYKREVLNQADSDNVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIDRARRGEGPTLVECETYRFRGHSLADPDELRNPAEKEHYAGRDPITALKKYLFENNLASEQELKTIDKKIDEILEEAVEFAEKSPQPQRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04178 433 NCBIfam pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 86 406 IPR017597 GO:0004739|GO:0006086|GO:0043231
Vivi7g04178 433 CDD TPP_E1_PDC_ADC_BCADC 91 389 - -
Vivi7g04178 433 FunFam Pyruvate dehydrogenase E1 component subunit alpha 57 414 - -
Vivi7g04178 433 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 76 416 - -
Vivi7g04178 433 Gene3D - 56 414 - -
Vivi7g04178 433 Pfam Dehydrogenase E1 component 94 396 IPR001017 GO:0016624
Vivi7g04178 433 Coils Coil 364 384 - -
Vivi7g04178 433 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 79 408 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04178 Vivi-Chr7 109236867 109239898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04178 42 433 Acyl Lipid Metabolism Gene Families AT1G01090 81.407 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04178 K00161 - gmx:100811207 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04178 7 109236867 109239898 Vivi7g04178 7 109236867 109239898 ECH