Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04059 ATGTCTTGGGCAGGTCCTCCTGAGGATATCTACCTTTCAACTTCACTTGCTAGTTATCTTGACAAGAAACTTCTTATATTGCTAAGAGATGGTAGAAAGCTCATGGGGACACTTCGCTCTTTTGATCAATTCGCTAATGCTGTTCTTGAGGGTGCCTGTGAGAGGGTTATTGTTGGTGATCTATATTGCGACATCCCTCTTGGTCTTTATGTGATCCGTGGAGAGAATGTTGTTCTAATTGGTGAGATGGACTTGGAGAGGGAGGAACTTCCCCCGCATATGACGCGCGTTCCAACAGAAGAAATTAGGAAGGCACAGAAAGTAGAAAGGGATGCTTCAGATCTGAAAGGGACTATGAGAAAAAGAATGGAATTCCTTGACTTGGACTAG 390 0.4385 MSWAGPPEDIYLSTSLASYLDKKLLILLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGEMDLEREELPPHMTRVPTEEIRKAQKVERDASDLKGTMRKRMEFLDLD 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04059 129 FunFam U6 snRNA-associated Sm-like protein LSm1 13 126 - -
Vivi7g04059 129 Pfam LSM domain 15 81 IPR001163 -
Vivi7g04059 129 CDD LSm1 13 83 IPR034104 GO:0000956
Vivi7g04059 129 Gene3D - 13 126 - -
Vivi7g04059 129 SMART Sm3 14 82 IPR001163 -
Vivi7g04059 129 ProSiteProfiles Sm domain profile. 11 86 IPR047575 GO:0003723
Vivi7g04059 129 PANTHER LSM1 9 123 IPR044642 -
Vivi7g04059 129 SUPERFAMILY Sm-like ribonucleoproteins 14 84 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04059 Vivi-Chr7 107101180 107103738 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04059 K12620 - rcu:8279030 234.958