Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04031 ATGGCGGTTTCAACTATATCTCTCTACGCGAGTCCACCGAGTAGTGTATGTTCCGCGCCGCATCAGATTAGTCCTCACGCTTCCTATGATTTCGATTTCGGATCTAGATCTTCGTCCCCGGCATCGACGGCTACAGCGTCGACATCGGCGAGGCCTATGATTGGTGGATTGTCGTGTTTGTTTTCGTCTTCGGTGGCGGTGAAGCATGTTCCGTTGACGAGCTTTTCCGGTGGAGATGAAGATGAATTGAAGGAGCTTGGTAGTTCGTTTTCGTATTCGTATTCGCCGAGTAAGTTTGGTGGATCTTGGAAGAGGGATAGGGATCATCAGATTCAGAGTCCGGTTTCGGTTTTTCAGTGTCCGGTTTCGTGTAGTAGTAGTATGGGGACGGTTCGTGGTGCGTCGAGGAGTAGTGCTGGTGGGTTATTTGAAGGGTTTGTGAGAAGTGCTTTGGGTTCTTCTTGTTTGGATTATGAAACTACTGATGTTAGGCTTCGCGGTGGTGGTGGTGAATTTGATGGAAGTGGTTCTTCTGGAGTTGTTGATGAGTTGACTTTCAATTTGGAGGATACTTTTGTGGAAGGTTGCTTTGGATTTGAGTTTGAGCCTTATGCTAAGAAGTTGTTGATGAGTGCTCAATTGAGGCACAAGATCTTTTGTGAAGAGTTTGTTATTAAGGCATTTTGTGAAGCTGAGAAAGCACATAGAGGACAGATGCGAGCTAGTGGTGATCCGTATTTGCAGCATTGTTTGGAAACTGCCGTGTTGTTGGCTTTGATCGGTGCAAATTCCACTGTAGTTGCTGCAGGGCTTTTGCATGATACACTTGATGATGCTTTTCTTACTTATGATTATATATTTGGGATGTTTGGAGCTGGAGTTGCTGATTTAGTTGAAGGGGTTTCTAAACTAAGTCATTTAAGCAAGCTGGCCAGAGACAACAACACAGCTAGTAAGTCTGTTGAAGCAGATCGCCTGCATACAATGTTCCTTGCCATGGCAGATGCAAGAGCTGTCCTTATTAAATTGGCAGACCGATTGCATAATATGATGACACTAGATGCATTGCCGGTTGCCAAGCAGCAGAGGTTTGCAAAGGAGACTTTGGAGATTTTTGCACCTTTGGCCAATCGCTTGGGAATAGCCAATTGGAAGGAACAGTTGGAAAATTTATGTTTTAAGCATCTCAACCCTGTGCAGCACATGGAGCTTTCGTCAAAACTTGTGGAATCGTATGATGATGCAATGATTGCTTCTGCCATAGAAAGATTAGAGAAAGCACTCAAAGATGAAGGCATTTCTTATCATGTCATTTCTGGGCGGCACAAGAGCTTGTACAGCATTTATTGCAAAATGTTGAAGAAGAAACTAACCATAGATGATATCCATGACATTTATGGGCTGCGCTTGATTGTTGAGAAGGAGGAAGACTGCTACAAAGCCTTAAAAATTGTTCACCAGTTATGGTCAGAGGTACCTGGAAAACTGAAAGATTACATTCGTGGCCCCAAGTTCAATGGGTATCAATCTCTGCATACTGTGGTGATGGGTGAAGGCAAGGTTCCCCTCGAAGTACAAGTTCGAACAAAAGATATGCATTCGCAAGCAGAATTTGGATTTGCTGCTCATTGGAGGTACAAGGAAGATCATTGTCAGCTTTCTTCCTATGTGCTTCAGATGGTTGAATGGGCTCGTTGGGTTGTCACCTGGCAGTGTGAAGCAATGAGCAAAAATTCTACTTCTGTTGGATGTGTCGACTCAATCAAGCCACCTTGCAAGTTCCCTTCTCATGCTGATAATTGTCCATATTCTTATAAGCCTGATTGTGCGCAGGATGGGCCTGTGTTCGTTATCATGATTGAGAATGATAAGATGTCTGTTCAAGAGTTTTGTGCAAACTCAACAGTACTCGATTTGTTGGAGAGAGCCGGGCGAGCAAGCTGTAGGTTGACGACATATAGGTTCCCTCTGAAGGAAGAATTGAGGCCAAGACTGAATCACAAGCCTGTAAGTGATCCAAATTGCAAGTTGAAGATGGGAGACGTGGTCGAGCTTACACCGGCCATACCTGACAGGTATCTGACTGAATATAGGGAAGAAATCCAGCGAATGTATGATCGCGGGCTAACTGTATCAAAAATGGGAACTACTACTGCAAGCAGCATGGTTGGCACCAGTTGA 2181 0.4443 MAVSTISLYASPPSSVCSAPHQISPHASYDFDFGSRSSSPASTATASTSARPMIGGLSCLFSSSVAVKHVPLTSFSGGDEDELKELGSSFSYSYSPSKFGGSWKRDRDHQIQSPVSVFQCPVSCSSSMGTVRGASRSSAGGLFEGFVRSALGSSCLDYETTDVRLRGGGGEFDGSGSSGVVDELTFNLEDTFVEGCFGFEFEPYAKKLLMSAQLRHKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANSTVVAAGLLHDTLDDAFLTYDYIFGMFGAGVADLVEGVSKLSHLSKLARDNNTASKSVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPVAKQQRFAKETLEIFAPLANRLGIANWKEQLENLCFKHLNPVQHMELSSKLVESYDDAMIASAIERLEKALKDEGISYHVISGRHKSLYSIYCKMLKKKLTIDDIHDIYGLRLIVEKEEDCYKALKIVHQLWSEVPGKLKDYIRGPKFNGYQSLHTVVMGEGKVPLEVQVRTKDMHSQAEFGFAAHWRYKEDHCQLSSYVLQMVEWARWVVTWQCEAMSKNSTSVGCVDSIKPPCKFPSHADNCPYSYKPDCAQDGPVFVIMIENDKMSVQEFCANSTVLDLLERAGRASCRLTTYRFPLKEELRPRLNHKPVSDPNCKLKMGDVVELTPAIPDRYLTEYREEIQRMYDRGLTVSKMGTTTASSMVGTS 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04031 726 CDD NT_Rel-Spo_like 420 538 IPR007685 GO:0015969
Vivi7g04031 726 SUPERFAMILY Nucleotidyltransferase 387 576 IPR043519 -
Vivi7g04031 726 SMART hd_13 242 359 IPR003607 -
Vivi7g04031 726 CDD HDc 244 372 IPR003607 -
Vivi7g04031 726 SMART RelA_SpoT_2 440 550 IPR007685 GO:0015969
Vivi7g04031 726 SUPERFAMILY HD-domain/PDEase-like 206 397 - -
Vivi7g04031 726 ProSiteProfiles HD domain profile. 246 350 IPR006674 -
Vivi7g04031 726 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 120 692 - -
Vivi7g04031 726 FunFam GTP pyrophosphokinase RelA 398 530 - -
Vivi7g04031 726 Gene3D Hypothetical protein af1432 205 397 - -
Vivi7g04031 726 FunFam GTP pyrophosphokinase RelA 207 397 - -
Vivi7g04031 726 Pfam Region found in RelA / SpoT proteins 440 549 IPR007685 GO:0015969
Vivi7g04031 726 ProSiteProfiles S4 RNA-binding domain profile. 664 701 - -
Vivi7g04031 726 Gene3D Beta Polymerase, domain 2 401 530 IPR043519 -
Vivi7g04031 726 Pfam HD domain 231 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04031 Vivi-Chr7 106569586 106573372 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04031 241 547 EF-hand Containing Proteins AT3G17470 30.909 8.65e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04031 K00951 - gmx:100787301 1157.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04031 7 106569586 106573372 Vivi7g04031 7 106569586 106573372 ECH