Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04019 ATGAAGATGATTCACATTATTGTTTTCTTTTTTTATCTACTCTCATATACCTCCCATGCTGTATCTACCAATGATTTCTGTGTAGCCAACTTTATGTTTCCAAAAACTCCTTCAGGCTATCCATGCAAGCCAGAAACAAATGTAACAGCAGATGATTTTGCATCCTCTAATCTTAATGTACTCCGCACTGCATTTGTAAAGGATATACCAGGTCTCAATGGACTCGGTATCTCTGCGGCAAAAATAGATATTGATATAAATGGAACGGTTCCAATGCATATTCATCCTGATGCATCGGAGTTAATAATCGTTGCTCGAGGTCAAATTACTGCTGGATTTATAACACCTACAAAACTTTATGAGAAAAATCTTAAAGTTGGTGATGTTTTCGTTTTTCCAACGGGACTATTGCATTTTCAAGTTAATACTGGTTCGGAAAATGCTATTGTTTATGCTGTTTATGGTAGCTCAAACCCTAGCATTCAATTACTTTTTGATTTGTTATTTAAAAATAACTTACCAACTCCAATAATTGAAAAGACTACTCTCCTTGATCCTTCACAAATTATGAAGCTTAAGGCTCAGCTTGGTGGCAGTGGCTAG 603 0.3582 MKMIHIIVFFFYLLSYTSHAVSTNDFCVANFMFPKTPSGYPCKPETNVTADDFASSNLNVLRTAFVKDIPGLNGLGISAAKIDIDINGTVPMHIHPDASELIIVARGQITAGFITPTKLYEKNLKVGDVFVFPTGLLHFQVNTGSENAIVYAVYGSSNPSIQLLFDLLFKNNLPTPIIEKTTLLDPSQIMKLKAQLGGSG 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04019 200 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 15 194 - -
Vivi7g04019 200 CDD cupin_OxOx 23 196 IPR001929 GO:0030145
Vivi7g04019 200 SUPERFAMILY RmlC-like cupins 51 197 IPR011051 -
Vivi7g04019 200 Gene3D Jelly Rolls 20 200 IPR014710 -
Vivi7g04019 200 SMART Cupin_1_3 46 190 IPR006045 -
Vivi7g04019 200 ProSitePatterns Germin family signature. 88 101 IPR019780 GO:0030145
Vivi7g04019 200 PRINTS Germin signature 93 113 IPR001929 GO:0030145
Vivi7g04019 200 PRINTS Germin signature 122 142 IPR001929 GO:0030145
Vivi7g04019 200 PRINTS Germin signature 155 170 IPR001929 GO:0030145
Vivi7g04019 200 Pfam Cupin 55 188 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04019 Vivi-Chr7 106386439 106387079 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04019 1 199 Miscellaneous Gene Families AT5G20630 44.550 3.84e-55 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04019 - - gmx:100527498 221.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04019 7 106386439 106387079 Vivi7g04019 7 106386439 106387079 ECH