Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04017 ATGAAGATTATTCACACTATTATTTTCTTTTTTTCTCTTGCCTCATTTTATATCCCTCATGCTACTTCTAGCAATGATTTTTGTGTAGCAAACCTATTACTTCCAACCACCCCTTCAGGGTATCAATGCAAATCGGAAGATAATGTAACAGTGAATGATTTTGTATTCTCTGGCTTTGTAGCTCCAAAAATAGAAGATCCTTTTAAGGTTGGATTTACTCCTGCATTTGTCACCCAAATACCAGGTCTTAACGGACTTGGTGTTTCGGCGGTAAGAGCAGACATGGATGTAAATGGAACGGTACCACTTCACTCTCATCCTGATGCTACTGAATTAATTATCAATTATGAAGGCGAAGTGACGGCCGGATTTATTACGCCAAACAAAGTTTATTTAAAGGTTCTTAAACCTGGTGATGTTATGGTTATTCCAAAGGGAGTATTGCATTTTCTAGTTAACACTAGTGGTAAAAAAGGCACTGGTTTTGCATTTTTTAGTAGCTCAAACCCTAGTGTGCATTTGTTTGATAATCTATTATTTGGCAATGATTTATCAAGTTCCATAATTGCACAAACTACTTTACTTGATGTCGAACAAATTAAGAAGCTTAAGGGTCAGTTTGGCGGTAGTGGTTAG 636 0.3664 MKIIHTIIFFFSLASFYIPHATSSNDFCVANLLLPTTPSGYQCKSEDNVTVNDFVFSGFVAPKIEDPFKVGFTPAFVTQIPGLNGLGVSAVRADMDVNGTVPLHSHPDATELIINYEGEVTAGFITPNKVYLKVLKPGDVMVIPKGVLHFLVNTSGKKGTGFAFFSSSNPSVHLFDNLLFGNDLSSSIIAQTTLLDVEQIKKLKGQFGGSG 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04017 211 CDD cupin_OxOx 26 207 IPR001929 GO:0030145
Vivi7g04017 211 PRINTS Germin signature 104 124 IPR001929 GO:0030145
Vivi7g04017 211 PRINTS Germin signature 133 153 IPR001929 GO:0030145
Vivi7g04017 211 PRINTS Germin signature 166 181 IPR001929 GO:0030145
Vivi7g04017 211 Gene3D Jelly Rolls 21 211 IPR014710 -
Vivi7g04017 211 Pfam Cupin 72 200 IPR006045 -
Vivi7g04017 211 FunFam Auxin-binding protein ABP19a 21 210 - -
Vivi7g04017 211 ProSitePatterns Germin family signature. 99 112 IPR019780 GO:0030145
Vivi7g04017 211 SUPERFAMILY RmlC-like cupins 25 207 IPR011051 -
Vivi7g04017 211 SMART Cupin_1_3 57 201 IPR006045 -
Vivi7g04017 211 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 21 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04017 Vivi-Chr7 106366818 106367453 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04017 1 210 Miscellaneous Gene Families AT5G20630 45.755 6.39e-55 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04017 - - gmx:100527498 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04017 7 106366818 106367453 Vivi7g04017 7 106366818 106367453 ECH