Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03896 ATGAAAGCAATGGTTATGGCTCTGATTTCTCTATTTATCTTCTCCTTATTCTTCACTTCAAGTGGAGAAATTTCAGAGCAACCTGGAGTAAACTATGGACAACTAGGTAACAACCTTCCAACACCAACAGCCTCTGTGTCTCTCATCAAAAACCTCAAAGCCAAACGGGTCAAAATCTATGACACAAATCCAGAAATCCTTAAAGCCCTCGAAAACACAGGACTCCAACTCCAAGTATCAATCATGCTGCCAAATCAACTCATTACCAACATATCCTTAAACCAAACATTCTCAAACCAATGGATCCAATCAAACCTCGTACCATTTTATCCAAAAACGCTCATTCGTTATCTTCTCGTCGGTAATGAACTCATTTCCTCAACAACAAACCAAACATGGCCTCACATTGTACCTGCGATGCGTCGAATCAAACATTCCTTAACTATCTATGGTTTGCATAAAATCAAAGTTGGAACCACTTCAGCAATGGATGTATTACAAACTTCATTTCCACCTTCAAATGGAACATTTAGAAATGACATTGCCTTTAGTGTTATTAAACCCATGTTGGAGTTCTTACATGTTACCAACTCTTATTTCTTCTTGGATGTTTATCCGTTTTTTGCTTGGACTTCAGATCCTATTAATATTAACTTGAATTATGCTCTTTTTGAATCCAATAACATCACGGTTACGGATTCAAATACGGGTTTGGTTTATACTAATTTATTTGATCAAATGGTGGATGCGGTTTATTTTGCAATGGAGGGACTAGGGTTTCCGGGTATTCGGATCTTTATTGCTGAAACGGGTTGGCCTAATGGTGGCAACTTGGACCAACTCGGTGCGAATATTCACAATGCTGCAACATATAACAGAAACTTTGTAAAGAAAGTTACAAAAAAACCTCATATAGGGACACCGGCTCGACCGGGTTTGGTTCTACCGTCATTTATATTTGCTTTGTTTAATGAAAACTTGAAATCGGGTTTGGGGACAGAGCGTCACTTTGGGTTATTATACCCAAATGGCTCAAATATTTACGAGATCGACCTTTCTGGCAAAACTCTAGAGTCGGAGTTTAAGACATTGCCACCGGCAGAGGATTATAAAGGGAAGGCGTGGTGTGTGGTGGCACAGGGAGCAAATGAGACGGCGGTTGTGGAGGCATTGTCATACGCTTGCTCACAAGGTAACCAAACATGTGATTCGGTTCAACTCGGGAAACCGTGTTTTAAACCAGATTCAGTGGTGGCTCATGCTAGCTATGCATTTAGCTCCTATTGGTCTCAGTTTAGACATGTGGGTGGAACTTGTCATTTCAACGGGCTTGCCACCCAAATTGCAAAGGATCCAAGTTATGGATCTTGCAAGTACCCAAGTGTGACCCTTTGA 1395 0.4065 MKAMVMALISLFIFSLFFTSSGEISEQPGVNYGQLGNNLPTPTASVSLIKNLKAKRVKIYDTNPEILKALENTGLQLQVSIMLPNQLITNISLNQTFSNQWIQSNLVPFYPKTLIRYLLVGNELISSTTNQTWPHIVPAMRRIKHSLTIYGLHKIKVGTTSAMDVLQTSFPPSNGTFRNDIAFSVIKPMLEFLHVTNSYFFLDVYPFFAWTSDPININLNYALFESNNITVTDSNTGLVYTNLFDQMVDAVYFAMEGLGFPGIRIFIAETGWPNGGNLDQLGANIHNAATYNRNFVKKVTKKPHIGTPARPGLVLPSFIFALFNENLKSGLGTERHFGLLYPNGSNIYEIDLSGKTLESEFKTLPPAEDYKGKAWCVVAQGANETAVVEALSYACSQGNQTCDSVQLGKPCFKPDSVVAHASYAFSSYWSQFRHVGGTCHFNGLATQIAKDPSYGSCKYPSVTL 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03896 464 SMART X8_cls 374 459 IPR012946 -
Vivi7g03896 464 SUPERFAMILY (Trans)glycosidases 29 351 IPR017853 -
Vivi7g03896 464 FunFam Glucan endo-1,3-beta-glucosidase 4 369 463 - -
Vivi7g03896 464 FunFam Glucan endo-1,3-beta-glucosidase 14 26 357 - -
Vivi7g03896 464 Pfam Glycosyl hydrolases family 17 29 351 IPR000490 GO:0004553|GO:0005975
Vivi7g03896 464 Gene3D - 370 462 - -
Vivi7g03896 464 Gene3D Glycosidases 27 359 - -
Vivi7g03896 464 Pfam X8 domain 375 446 IPR012946 -
Vivi7g03896 464 ProSitePatterns Glycosyl hydrolases family 17 signature. 263 276 IPR000490 GO:0004553|GO:0005975
Vivi7g03896 464 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 18 446 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03896 Vivi-Chr7 104992055 104994065 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03896 24 464 Glycoside Hydrolase AT3G23770 53.020 1.66e-175 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03896 - - ccaj:109805358 706.442