Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03715 ATGGCTATGCAACCGTTTGATCCGTATTACATGTACCAGCCAGATGAACGGAGCAACATAAACACGCTCTTCGTCTCTGGTCTCCCAGACGACGTGAAGGCGCGTGAGATTCACAACCTCTTCCGCCGTCGCCCTGGATTTGACTCTTGCCAACTCAAGTATACCGGCCGTGCTAATCAGGTTGTTGCATTTGCTACGTTTTTCAATAATCAAGCCGCAATGGCAGCGTTGCACGCCCTAAATGGTGTGAAATTTGATCCTCAATTTGGGTCCGTCTTACATATTGAACTTGCCAGGTCAAACTCTAGGAGGAAGCGAAACATAGGTGGTGGAGCCTACGTGGTTATAGATAAAAGGTCAAAAGGGGAAGCCAATGTTCAGGGAGCCTCAAGTGATGATGGTGAAAGTGATCCTGATGAACCATCAGAAAATGGAAGCAACCATGGTGATATAGCAACCACCCAAAGCGGCGATGCTGTTGTTGGTTCTGACAATCGTGTACCTGGAGCAAGGGAGCAACATGGAAAGGGTGGTGGTGATGTAGGACCATGTTCCACTCTTTTTATTGCAAATCTTGGTCCAAACTGCACCGTGGATGAATTAAAGCAAGCTTTTTCGGTGCATGCTGGATTCAACTTGGTCAAAATGCGTTCAAGAGGAGGAATGCCTGTAGCATTTGCTGATTTTGAGGAAGTTGATCAAGCTGTTAAGGTCATGGAAGAGCTTCAGGGAACCTCGCTTCCATCATCAGATCGGGGTGGCATGCACATAGAATATGCACGGTCTAGAATGAGGAAGAAGCGGTAG 807 0.4734 MAMQPFDPYYMYQPDERSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNNQAAMAALHALNGVKFDPQFGSVLHIELARSNSRRKRNIGGGAYVVIDKRSKGEANVQGASSDDGESDPDEPSENGSNHGDIATTQSGDAVVGSDNRVPGAREQHGKGGGDVGPCSTLFIANLGPNCTVDELKQAFSVHAGFNLVKMRSRGGMPVAFADFEEVDQAVKVMEELQGTSLPSSDRGGMHIEYARSRMRKKR 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03715 268 FunFam RNA-binding protein with multiple splicing 177 267 - -
Vivi7g03715 268 SUPERFAMILY RNA-binding domain, RBD 21 247 IPR035979 GO:0003676
Vivi7g03715 268 MobiDBLite consensus disorder prediction 146 161 - -
Vivi7g03715 268 MobiDBLite consensus disorder prediction 123 179 - -
Vivi7g03715 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 262 IPR000504 GO:0003723
Vivi7g03715 268 Gene3D - 16 103 IPR012677 -
Vivi7g03715 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 100 IPR000504 GO:0003723
Vivi7g03715 268 SMART rrm1_1 22 96 IPR000504 GO:0003723
Vivi7g03715 268 SMART rrm1_1 186 258 IPR000504 GO:0003723
Vivi7g03715 268 FunFam RNA-binding protein with multiple splicing 2 18 108 - -
Vivi7g03715 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 249 IPR000504 GO:0003723
Vivi7g03715 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Vivi7g03715 268 Gene3D - 181 268 IPR012677 -
Vivi7g03715 268 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 147 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03715 Vivi-Chr7 103091977 103096681 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03715 - - mtr:25500436 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g03715 7 103091977 103096681 Vivi7g03715 7 103091977 103096681 ECH