LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi7g03712	ATGGACCCCTCTCTATCAGCGAGATCGAGTTTAACTTTCGGAGAAACACTGTGCGTGGTGTTCATTCCGCTGATCGGAATCGCTGAAGCCTTGTTTTATGGCTTAACAAGTTGCTTCAGTTTCCGAAGCTTAGAGCAGAAGAAGAAGAAAGAGAAGAAGTTTTCTTCTACGTTTGAGGATATTCTCGCACTCGCTAATGATTCTCCTTTTAATGTGAATGAAGTAGAGGCTTTGCATGAGTTGTACAAGAAGTTGAGTTGTTCAATCATTGATGATGGTCTTATACACAAAGAAGAGCTTACGTTGGCATTAATGAAGACCGCGGTTGGCAAGAATCTTTTCCTTGATAGGGTGTTTGATCTCTTTGATGAAAAAAAGAATGGTGTTATAGAATTTGAGGAGTTTGTGCATGCTCTCAGTGTCTTTCATCCTAATACTCCTTTGGAAAAGAAAATTGATTTTGCTTTTAGATTGTATGACTTGAGACAGACCGGATACATTGAACGAGAAGAAGTCCGACAAATGGTGGTTGCCATTTTATCAGAATGTGGCATGGATGTGGAAAATGAAATACTTGAAGCCATTATTGATAAGACATTTCAAGATGCTGATGCTGACAAGGATGATAAGATCAGTAAAGAGGAGTGGAGGGAGTTTGTCATTCGGAACCCCTCACTCTTAAGGCACCTGACTCTTCCTAATCTGAAGGAGATAACCACAGTATTTACCAGTTTCATTTTCAACACTGGAGTTGAAGATTCCCACTGGTAA	771	0.3995	MDPSLSARSSLTFGETLCVVFIPLIGIAEALFYGLTSCFSFRSLEQKKKKEKKFSSTFEDILALANDSPFNVNEVEALHELYKKLSCSIIDDGLIHKEELTLALMKTAVGKNLFLDRVFDLFDEKKNGVIEFEEFVHALSVFHPNTPLEKKIDFAFRLYDLRQTGYIEREEVRQMVVAILSECGMDVENEILEAIIDKTFQDADADKDDKISKEEWREFVIRNPSLLRHLTLPNLKEITTVFTSFIFNTGVEDSHW	256

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi7g03712	256	ProSitePatterns	EF-hand calcium-binding domain.	204	216	IPR018247	-
	Vivi7g03712	256	ProSiteProfiles	EF-hand calcium-binding domain profile.	191	226	IPR002048	GO:0005509
	Vivi7g03712	256	FunFam	calcineurin B-like protein 3	60	253	-	-
	Vivi7g03712	256	ProSiteProfiles	EF-hand calcium-binding domain profile.	147	182	IPR002048	GO:0005509
	Vivi7g03712	256	SMART	efh_1	195	223	IPR002048	GO:0005509
	Vivi7g03712	256	SMART	efh_1	114	142	IPR002048	GO:0005509
	Vivi7g03712	256	SMART	efh_1	151	179	IPR002048	GO:0005509
	Vivi7g03712	256	SUPERFAMILY	EF-hand	65	244	IPR011992	-
	Vivi7g03712	256	PANTHER	CALCINEURIN B	47	254	IPR045198	GO:0005509\|GO:0019722\|GO:0019900
	Vivi7g03712	256	Pfam	EF hand	115	140	IPR002048	GO:0005509
	Vivi7g03712	256	Pfam	EF-hand domain pair	150	220	IPR002048	GO:0005509
	Vivi7g03712	256	Gene3D	-	62	254	-	-
	Vivi7g03712	256	PRINTS	Recoverin family signature	211	231	-	-
	Vivi7g03712	256	PRINTS	Recoverin family signature	165	183	-	-
	Vivi7g03712	256	PRINTS	Recoverin family signature	118	139	-	-
	Vivi7g03712	256	CDD	EFh	115	176	IPR002048	GO:0005509
	Vivi7g03712	256	ProSiteProfiles	EF-hand calcium-binding domain profile.	110	145	IPR002048	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi7g03712	Vivi-Chr7	103059765	103063511	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi7g03712	53	254	EF-hand Containing Proteins	AT5G55990	58.416	2.16e-82	244

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi7g03712	K06268		-	gmx:100306023	386.341