Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03649 ATGTCCTTCATATTTGGAGGTGATAAGATCAAAGGCACATTAGTGCTTATGCAAAAGAATGTGTTGGACATAAACAGCTTAACAGATCCTGCAAAGATTCTAGATGGAGCCTTGGATGGTTTTGGATCCATACTTGATACTCTTACTTCCTTCTTAGGTTCATCCGTTTGTCTTCAGTTAATTAGTTCTACTAAACCTCTCTTAAGTGGAGAAGGAAAAGTGGGAAAAGAAGCTTATTTAAAACAAGCAATTACCAATTTACCAACCTTGGGAGACAAGCAAACTGCATTCAGCATTGAATTTGAATATGATAGCAGCTTTGGAATTCCTGGAGCATTCAAAATCAAAAACTACATGTCAACTGAGTTCTATCTTGTCAGCTTAACTCTCGACGATATTCCTAATCTTGGAACCATTCACTTTGTTTGCAACTCCTGGATTTACAACGCCAAGAAATACCAAACCGATCGCATTTTCTTCGCCAACAACGTTTTTCTACCAAGTGATACACCGGCTCCGTTGGTCTACTATAGACAATTAGAGTTGAAGACTTTACGAGGAAATGGAACGGGAGAGCGTCAAGAATGGGATAGAATTTATGATTATGATGTTTATAATGATTTGGGTGAGCCTGATAAGGGTCAAAGCTATGCTCGTCCAATTCTAGGACGATCTAGCGATCATCCTTATCCTCGTAGGGGAAGAACCGGGAGAAAACCTACTGCAACAGATCCTAACAGTGAGAGTAGGGGGAATAGTGTGTATATTCCAAGAGATGAAGCTTTCGGTCACTTGAAATCCTCGGATTTTCTTGTTTATGGACTTAAGTCTGTTTCTCAAGATGTAATTCCATTGCTACAATCTGTGTTCGACATAAATTTCACACCAACCGAATTTGATAGCTTTGATGATGTGTTTGATCTATATGAAGGAGGAATTAAGCTACCGACCGATATAATTAGCAAAATTAGTCCTTTACCAGTGTTATCAGAAATCTTTCGAACCGATGGTGAAGAAGTCCTCAAGTTTCCACCACCTAAAGTAATTCAAGTGAGTAAGTCTGCGTGGATGACTGATGAAGAATTTGGAAGAGAGATTGTTGCTGGTGTAAATCCCGGCCTAATTCGCTCCCTCCAGGAGTTTCCTCCAAAAAGTAAGCTTGATAGTGCAATCTATGGAGATCATACTAGCACAATAACCAAAGAGCAGATAGAGCTTAACTTGGAGGGTCTCAGTACTCTTGATGAGGCTATACAAAACAAGAAACTGTTCTTGCTAGAACACCATGATGCAATAATTCCATATCTAAGGCTAATAAACTCAACTTCAACAAAAGCCTATGCTTCAAGGACCATTCTTTTCTTGAAAAGTGATGGAACTTTAAAGCCTTTAGCCATTGAGTTAAGCCTTCCACATCCTCAAGGAGATCAATTCGGTGTTGTTAGTAATGTTTACTTGCCTGCAATTGAAGGTGTTGAAGCTACAATTTGGCTACTTGCCAAAGCTTATGTTATAGTAAATGACTCATGCTTTCACCAACTTGTCAGCCACTGGTTGAATACTCATGCAGTTGTTGAGCCATTTGTGATAGCAACGAATAGGCAACTTAGCGTGCTTCATCCTATTTATAAACTATTGCATCCGCATTATCGCGATACCATGAATATAAACGCACTTGCTAGACAATCCTTAGTCAACGCAGATGGTATTATTGAAAAGACATTCTTATGGGGAGGGTATGCTATGGAGATATCATCCAAAGTTTATAAGGATTGGGTTTTTACAGACCAAGCCCTACCCGCCGATCTCATCAAAAGAGGAATAGCAGTTGAGGATTCAACTTCTCCTCACGGTCTTCGTTTACTGATAGAGGATTACCCGTATGCTGTTGATGGGCTCGATATTTGGGATGCTATTAAGACTTGGGTGCAAGACTATGTTTCGATATACTACATAACAGATGACAAAATTCAACAAGACTCGGAACTCCAAGCTTGGTGGAAAGAAGTTGTAGAAGAAGGTCATGGTGACAAGAAAGGCGAGCCGTGGTGGCCTAAATTACAAACTCGCGAAGATTTGATTCATGTTTCTAGTATTATCATTTGGACTGCTTCAGCTCTTCACGCAGCTGTTAATTTTGGACAATATCCGTATGGAGGTTTCATATTAAACCGTCCAACTCTCAGTAGGCGATTAATGCCTGAGAAAGGTACTACTGAGTACGATGAGCTAGCGACTAACCCTCAAAAGGCGTACTTGAAAACAATTACACCCAAGTTTCAAACTCTTATCGATCTATCGGTCATAGAAATCTTGTCAAGGCATGCTTCTGATGAGTACTACCTTGGACAAAGAGACAGTGCTGAGTATTGGACTTCTGATACAAATGCCATAGCAGCTTTCAAGAAGTTTGGAAAAACACTAGCTGAAATTGAGGGACAACTCATTCTGAGGAACAACAATGAATCATTGAGAAACCGAGTTGGGCCGGTTAGCATGCCTTATACTCTTCTTTATCCTTCAAGTGAAGAAGGACTTACTTTTAGAGGAATTCCCAACAGTATCTCAATCTAA 2574 0.399 MSFIFGGDKIKGTLVLMQKNVLDINSLTDPAKILDGALDGFGSILDTLTSFLGSSVCLQLISSTKPLLSGEGKVGKEAYLKQAITNLPTLGDKQTAFSIEFEYDSSFGIPGAFKIKNYMSTEFYLVSLTLDDIPNLGTIHFVCNSWIYNAKKYQTDRIFFANNVFLPSDTPAPLVYYRQLELKTLRGNGTGERQEWDRIYDYDVYNDLGEPDKGQSYARPILGRSSDHPYPRRGRTGRKPTATDPNSESRGNSVYIPRDEAFGHLKSSDFLVYGLKSVSQDVIPLLQSVFDINFTPTEFDSFDDVFDLYEGGIKLPTDIISKISPLPVLSEIFRTDGEEVLKFPPPKVIQVSKSAWMTDEEFGREIVAGVNPGLIRSLQEFPPKSKLDSAIYGDHTSTITKEQIELNLEGLSTLDEAIQNKKLFLLEHHDAIIPYLRLINSTSTKAYASRTILFLKSDGTLKPLAIELSLPHPQGDQFGVVSNVYLPAIEGVEATIWLLAKAYVIVNDSCFHQLVSHWLNTHAVVEPFVIATNRQLSVLHPIYKLLHPHYRDTMNINALARQSLVNADGIIEKTFLWGGYAMEISSKVYKDWVFTDQALPADLIKRGIAVEDSTSPHGLRLLIEDYPYAVDGLDIWDAIKTWVQDYVSIYYITDDKIQQDSELQAWWKEVVEEGHGDKKGEPWWPKLQTREDLIHVSSIIIWTASALHAAVNFGQYPYGGFILNRPTLSRRLMPEKGTTEYDELATNPQKAYLKTITPKFQTLIDLSVIEILSRHASDEYYLGQRDSAEYWTSDTNAIAAFKKFGKTLAEIEGQLILRNNNESLRNRVGPVSMPYTLLYPSSEEGLTFRGIPNSISI 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03649 857 CDD PLAT_LH2 9 162 IPR042057 -
Vivi7g03649 857 Gene3D - 166 265 - -
Vivi7g03649 857 Gene3D PLAT/LH2 domain 2 165 - -
Vivi7g03649 857 Gene3D - 355 489 - -
Vivi7g03649 857 Pfam PLAT/LH2 domain 64 160 IPR001024 GO:0005515
Vivi7g03649 857 ProSiteProfiles PLAT domain profile. 27 161 IPR001024 GO:0005515
Vivi7g03649 857 ProSitePatterns Lipoxygenases iron-binding region signature 1. 512 526 IPR020833 GO:0016702|GO:0046872
Vivi7g03649 857 ProSitePatterns Lipoxygenases iron-binding region signature 2. 539 549 IPR020834 GO:0016702|GO:0046872
Vivi7g03649 857 Gene3D - 490 856 - -
Vivi7g03649 857 Gene3D - 266 354 IPR027433 -
Vivi7g03649 857 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 8 164 IPR036392 GO:0005515
Vivi7g03649 857 PRINTS Plant lipoxygenase signature 196 212 IPR001246 GO:0016491
Vivi7g03649 857 PRINTS Plant lipoxygenase signature 769 783 IPR001246 GO:0016491
Vivi7g03649 857 PRINTS Plant lipoxygenase signature 131 149 IPR001246 GO:0016491
Vivi7g03649 857 PRINTS Plant lipoxygenase signature 229 248 IPR001246 GO:0016491
Vivi7g03649 857 PRINTS Plant lipoxygenase signature 447 471 IPR001246 GO:0016491
Vivi7g03649 857 PRINTS Plant lipoxygenase signature 296 317 IPR001246 GO:0016491
Vivi7g03649 857 PRINTS Plant lipoxygenase signature 157 178 IPR001246 GO:0016491
Vivi7g03649 857 PRINTS Plant lipoxygenase signature 341 357 IPR001246 GO:0016491
Vivi7g03649 857 PRINTS Plant lipoxygenase signature 380 399 IPR001246 GO:0016491
Vivi7g03649 857 PRINTS Lipoxygenase signature 532 552 IPR013819 GO:0016702|GO:0046872
Vivi7g03649 857 PRINTS Lipoxygenase signature 494 511 IPR013819 GO:0016702|GO:0046872
Vivi7g03649 857 PRINTS Lipoxygenase signature 512 529 IPR013819 GO:0016702|GO:0046872
Vivi7g03649 857 PANTHER LIPOXYGENASE 8 857 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vivi7g03649 857 SUPERFAMILY Lipoxigenase 166 857 IPR036226 -
Vivi7g03649 857 MobiDBLite consensus disorder prediction 211 254 - -
Vivi7g03649 857 FunFam Lipoxygenase 166 265 - -
Vivi7g03649 857 FunFam Lipoxygenase 355 489 - -
Vivi7g03649 857 FunFam Lipoxygenase 491 856 - -
Vivi7g03649 857 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 164 857 IPR013819 GO:0016702|GO:0046872
Vivi7g03649 857 Pfam Lipoxygenase 174 840 IPR013819 GO:0016702|GO:0046872
Vivi7g03649 857 SMART LH2_4 8 162 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03649 Vivi-Chr7 102299794 102303322 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03649 9 857 Acyl Lipid Metabolism Gene Families AT1G55020 59.001 0.0 1038
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03649 K15718 - gmx:547869 1342.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07373 2 218015711 218019286 Vivi7g03649 7 102299794 102303322 PCT