Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03647 ATGTATGCAGGAGTGAAAAGTTGGATCAAGAGAGACCAAAAGGTGAAGGGGACAGTTCTGTTGATGCAAAAGAATGTTTTGGACATTAATGATCTTACTTCAGCTACAAGCACCAGTGGTTTAATCAAAGGTGGACTCAAAGTTGCTGGTGGCATTACAAACTCTTTGATTGACACTTACACTTCAGGTTGGGGCCGTTCCGTCGCTTTCAGGTTGATCAGTGCTACCGCTACAGATGGAAGTGGAAAAGGGAAAGTGGGGAAGGAAACATTTCTAGAAGGTCTTGTTACTTCCATACCGATATTGGGAGCTGGACAGTCTGCATTTGATATTCATTTTGAATGGGATAGTGAGATGGGGATTCCGGGAGCAGTTTATGTTGAGAGCAATATGCAAGGAGAATTCTTTCTTGTAAGTTTGACACTTGAAGATATTCCCAATCATGGAACTATCAACTTTGTTTGCAACTCATGGATTTATAACCATTCAAAATATAAAACCGAACGCATTTTCTTCGCAAACAAGACATATCTTCCAAGTGAAACACCGGCTCCATTACTCTACTATAGACAAGAAGAATTAAAGACTTTAAGAGGAGATGGAACAGGAGAGCGCGTGGAATATGAAAGGATCTATGATTACGATGTGTACAATGATTTGGGTAATCTTGACAAGAAAGCTAGCTTAGCTCGTCCGGTTATTGGAGGATCTAGCAACATGCCTTACCCTAGAAGGGGGAGAACCGGTAGAAAACCATCTAAGAAAGATCCGAAAAGTGAGAGACGGAGCGACTTTTTTTACATTCCAAGAGATGAATCATTTGGTCATTTGAAGTCTTCAGACTTTCTTGTTTACATACTCAAATCAGCATCTCAAAATTTCGTTCCTCAATTGAGATCTATAGTTACGTTACAACTCAATAATTCTGAGTTTAACACATTCGATGAAATTCGTTCATTATACGAGGGTGGATTTAAATTACCTACCGGTATACTTAGCAAACTTAGCCCTATACCATTTTTCAAAGAAATCTTTCGAACTGATGGTGAATCGGCCCTTAAGTTTCCACCACCTAAAGTGATTCAAGTGAATCAGTCTGCATGGATGACCGATGAAGAATTTGCAAGGGAGATGATCGCTGGTGTGAATCCACACATCATCAAAAGGCTTCAAGAGTTTCCACCAAAAAGCAAGCTAGATATCCAACTCTATGGTGATAATACCAGCACTATAACCAAAGAACACTTGGAAACAAACATGGGAGGAGTCACTGTAGAACAAGCTATCCAAAACAACCAACTTTACATACTTGATCACCACGACCCAATATATCGATTTTTAAGGAAAATAAACGAAACTGATACAAAGACATATGCTACTAGAACCATCGTTTTCTTACAAAATGATGGAACTTTGAAGCCATTGGCCATTGAGCTAAGTAAGCCACATCCTCAAGCTGATAGTTTTGGTCCTGTTAGTAAAGTTTACTTGCCTGCAAAAGAAGGTGTTGAAGCTTCAATTTGGTTCCTCGCCAAGGCTTTCGTTGTTGTAAACGATGCCACATATCACCAACTTTGTAGCCATTGGTTGAACACTCACGCCGTTGTTGAGCCATTCATCATAGCGACAAATAGGCATCTTAGTGTGGTTCACCCTATTCATAAACTTTTACTTCCACATTATCGCGACACAATGAACATCAATGCACTTGCTAGAAATGTCTTGGTCAATGCTGAGGGTATTATAGAATCAACATTCTTGGGCGGTGCATATTCTGTTGAAATGTCTTCTTTTGTATACAAAGATTGGGTTTTCACTGAGCAAGGATTGACTCATGATCTACTCAAAAGGGGAGTGGCTGTTGAGGATCCAGCTTCCCCGCACGGTCTTCGTCTTCTGATAGAGGACTACCCTTATGCTTCTGATGGACTAGAGATATGGGATGCTATTAAATCATGGGTTGAAGAATATGTGAACTTCTACTACAAGTCAGATGCTGCTGTTGCGCAAGATTATGAACTCCAAGCATTTTGGAAAGAAGTTGTAGAAGTAGGTCATGGTGATTTGAAGGATGCTACATGGTGGTTCAAGATGCAAACTCGTGCAGAGTTGATTGAAGCATGCACCATCCTCATATGGATAGCATCAGCACTTCATGCAGCTGTTAATTTTGGACAGTATCCTTATGGAGGATACATCCTTAATCGACCAACGAAAAGCCGAAGACTAATGCCTGAAAAAGGGTCTGCTGAATATGATGAGCTTTCGAAGAACTTTCAGAAGGCGTATTTGAAAACAATCACACCAAAAAAAGATGCCCTTACCGACCTAACAATCTTAGAGGTCTTATCAAGGCATGCTTCGGATGAGCAGTATCTTGGACAGAGAAATGAAGGTGAGCTTTGGACTTCTGATTCACTGCCATTAGAGGCTTTCAAGAGGTTTGGAAGGAAGTTGGCTGAAATTGAGCAAAAGCTTGTTGAAAGGAACAACGATGAGTCGTTGAGGAATCGATATGGGCCTGTGAAGATGCCATATACTTTGCTTTATCCTTCTAGTGAGGAAGGATTGACTTGCAGAGGCATTCCCAATAGTATCTCCATCTAA 2607 0.4058 MYAGVKSWIKRDQKVKGTVLLMQKNVLDINDLTSATSTSGLIKGGLKVAGGITNSLIDTYTSGWGRSVAFRLISATATDGSGKGKVGKETFLEGLVTSIPILGAGQSAFDIHFEWDSEMGIPGAVYVESNMQGEFFLVSLTLEDIPNHGTINFVCNSWIYNHSKYKTERIFFANKTYLPSETPAPLLYYRQEELKTLRGDGTGERVEYERIYDYDVYNDLGNLDKKASLARPVIGGSSNMPYPRRGRTGRKPSKKDPKSERRSDFFYIPRDESFGHLKSSDFLVYILKSASQNFVPQLRSIVTLQLNNSEFNTFDEIRSLYEGGFKLPTGILSKLSPIPFFKEIFRTDGESALKFPPPKVIQVNQSAWMTDEEFAREMIAGVNPHIIKRLQEFPPKSKLDIQLYGDNTSTITKEHLETNMGGVTVEQAIQNNQLYILDHHDPIYRFLRKINETDTKTYATRTIVFLQNDGTLKPLAIELSKPHPQADSFGPVSKVYLPAKEGVEASIWFLAKAFVVVNDATYHQLCSHWLNTHAVVEPFIIATNRHLSVVHPIHKLLLPHYRDTMNINALARNVLVNAEGIIESTFLGGAYSVEMSSFVYKDWVFTEQGLTHDLLKRGVAVEDPASPHGLRLLIEDYPYASDGLEIWDAIKSWVEEYVNFYYKSDAAVAQDYELQAFWKEVVEVGHGDLKDATWWFKMQTRAELIEACTILIWIASALHAAVNFGQYPYGGYILNRPTKSRRLMPEKGSAEYDELSKNFQKAYLKTITPKKDALTDLTILEVLSRHASDEQYLGQRNEGELWTSDSLPLEAFKRFGRKLAEIEQKLVERNNDESLRNRYGPVKMPYTLLYPSSEEGLTCRGIPNSISI 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03647 868 PANTHER LIPOXYGENASE 13 868 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vivi7g03647 868 MobiDBLite consensus disorder prediction 232 262 - -
Vivi7g03647 868 Gene3D - 178 277 - -
Vivi7g03647 868 PRINTS Lipoxygenase signature 523 540 IPR013819 GO:0016702|GO:0046872
Vivi7g03647 868 PRINTS Lipoxygenase signature 543 563 IPR013819 GO:0016702|GO:0046872
Vivi7g03647 868 PRINTS Lipoxygenase signature 505 522 IPR013819 GO:0016702|GO:0046872
Vivi7g03647 868 Gene3D - 367 500 - -
Vivi7g03647 868 FunFam Lipoxygenase 502 867 - -
Vivi7g03647 868 FunFam Lipoxygenase 367 500 - -
Vivi7g03647 868 Pfam Lipoxygenase 186 851 IPR013819 GO:0016702|GO:0046872
Vivi7g03647 868 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 13 177 IPR036392 GO:0005515
Vivi7g03647 868 Pfam PLAT/LH2 domain 80 172 IPR001024 GO:0005515
Vivi7g03647 868 Gene3D PLAT/LH2 domain 5 177 - -
Vivi7g03647 868 Gene3D - 278 366 IPR027433 -
Vivi7g03647 868 PRINTS Plant lipoxygenase signature 241 260 IPR001246 GO:0016491
Vivi7g03647 868 PRINTS Plant lipoxygenase signature 458 482 IPR001246 GO:0016491
Vivi7g03647 868 PRINTS Plant lipoxygenase signature 208 224 IPR001246 GO:0016491
Vivi7g03647 868 PRINTS Plant lipoxygenase signature 308 329 IPR001246 GO:0016491
Vivi7g03647 868 PRINTS Plant lipoxygenase signature 143 161 IPR001246 GO:0016491
Vivi7g03647 868 PRINTS Plant lipoxygenase signature 780 794 IPR001246 GO:0016491
Vivi7g03647 868 PRINTS Plant lipoxygenase signature 169 190 IPR001246 GO:0016491
Vivi7g03647 868 PRINTS Plant lipoxygenase signature 353 369 IPR001246 GO:0016491
Vivi7g03647 868 PRINTS Plant lipoxygenase signature 392 411 IPR001246 GO:0016491
Vivi7g03647 868 ProSiteProfiles PLAT domain profile. 42 173 IPR001024 GO:0005515
Vivi7g03647 868 ProSitePatterns Lipoxygenases iron-binding region signature 1. 523 537 IPR020833 GO:0016702|GO:0046872
Vivi7g03647 868 ProSitePatterns Lipoxygenases iron-binding region signature 2. 550 560 IPR020834 GO:0016702|GO:0046872
Vivi7g03647 868 Gene3D - 501 867 - -
Vivi7g03647 868 SMART LH2_4 13 174 IPR001024 GO:0005515
Vivi7g03647 868 SUPERFAMILY Lipoxigenase 178 868 IPR036226 -
Vivi7g03647 868 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 176 868 IPR013819 GO:0016702|GO:0046872
Vivi7g03647 868 CDD PLAT_LH2 14 174 IPR042057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03647 Vivi-Chr7 102281599 102285389 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03647 13 868 Acyl Lipid Metabolism Gene Families AT1G55020 54.839 0.0 963
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03647 K15718 - gmx:100816880 1412.13