Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03546 ATGGAAGTCCCAACAAAGCCTTCTTCTGGTATCTCCAAGTGGCAATGCTCTTCAACCAAAAGCAAAATTTTGAACAACTTCAATCCTATATGCCAAGCTGTCCAAAAACTAACTCTCAAAGGAAAGTTTGTGATCACCTTGAATCAAAACAAATCAATACCTGGAAAATCCATTTCTGTTCAGATTTATAGCGGCACAGAAGTCGATCCTAATACCAGTAAAGGGTGGTTGAGTGAGAAAGCATATTTTAGAGAATGTGGTAGCAAGAAACATCGCCATGATGATGTTGATGTTGATGATGCACAAACCAAGATTAAGACATATAAGATTAAAATACATGTTGATGCATATTTTGGAACTCCGAGAGCTTTCGTGATTCAAAACAAAAACAAGAAGAAATTCTATCTTCTTTCTGCATCTATTGAAACTTGTACAAATAGAATCATTCACTTTGATTGCAATTCATGGATTTATCCAATCAAGAAGACTAGATTTGATAGACTTTTCTTCTCAAATAGATGCTATGTTCCGAGTCAAACACCTAGAGCTTTATTGGAACTAAGAAATGAAGAGCTTGATAAATTGAGAGGTAATGGAATGGATGAAAGAAAAGAATGGGATAGAATCTATGACTATGACTGCTACAATGATCTCGGAGATCCTGATAAAGGTTCAGAGCATTTTAGACCTGTCTTGGGAGGTTCAAGGTTGTATCCGTATCCACGTCGAGTTAGAACCGGTCGAAAAAATAGTACATCAGGTACTTCAAGGTCACAAGCAACAAGTTTTGACATATATGTTCCCTCAGACGAGACATTTAGTCCTAACAAATTGAAGGAGCTCAAGTCGAATTCTATCCAAGCCATAGTACAACTACTATCTTCAAAGACGGAATCGTTACCTCAACAAAGTTCGAGAAGCGTTGACTCATTTGAAGCGATACTTAACATGCTCTCTAGCAATAGAAACCAAACAATAGAGGGATGGATCAGAGACAACTTAAAGAAATTGGTGCCAAATGAGGACTTAAAGGAAATAACTCATGCAATCAAGGAAAACCATTTGCATGGTCCTATCCCTCAAAACATATATGAAAATGAATGGGCTTGGAATGATGACATGGAGTTTGGACGACAAATGCTTGCAGGAACACACCCAATCAGAATCCGGTGCTTGATGACATTTCCACCTCAAAACAAATATGGAGTACAAAGTTCAATAAAACAATCAACCATAGAACAGATGCTTGAAGGATGGACACTTCCTCAGGCTTTGGAACAAGGAAGAATATTCATGTTGGACCACCATGACTATCTCATGCCATATTTGAACAGAATAAATGCAAATGGGGTGTGTGCTTATGCATCAAGGACACTTCTATTCTTAAGGAGTGATGGCATGCTTAAGCCACTAACTATAGAACTCAGCTTGCCAGGATCATCTCTAGCTCTTGAAATCCATAGAATTTTTCTTCCATCAAAGCAAGGGACACAAGCAGCACTTTGGCAGCTTGCCAAAGCTCATGTTTTAGCTAATGATGCTTTTTACCATCTACTAGTTAGCCATTGGTTATACACACATGCAGTTGTTGAACCATTTATCATTGCTACCAAAAGAAGGCTAAGTGTAATGCATCCAATCCATAAAATATTGAATCCTCATTTCAAAGACACCATGCACATAAATGCCTTGACTAGACATATTCTTATTAACTCTGGTGGAATTCTTGAGAAAATATTATTTCCGGGCGAAACCTGTATGCAAATAACTTGTGATCTCTATAAAGAGTGGAAATTTACCGAACAAGGACTTCCTGCTGATCTTCTCAAAAGGGGCATGGCTGTAGAAAGCCTAGATGAGAACAATCCAAATGGGATTCAACTTCTCATGTTGGATTATCCCTATGCCGTTGATGGACTTGAAATATGGGCTGCCATAAAATCATGGGTCAACGACTTCTGCTCATTCTTCTACAAAGACAACGAGGCCATTGTAGCTGATGTTGAACTTCAAGCATGGTGGTCAGAGATTCGATCTATTGGCCACGGCGACAACCACAATGATACATGGTGGTACCAAATGACAACACTCTCAAATCTTGTAGAAGCAATAACAACTCTCATATGGATTGCTTCGGCACGACATGCAATTATAAACCACCAAAAACATTCACATAATGATAATTCACCCACACTATGCAGGAAGTTTATTCCCGTAGAAGGAACTGTTGAATTCGGTGAGTTCCTCAAGGATCCCGATAAGTTCTTTCTGAAGATGTTACCTGATAGGTTTGAGACGGGTCTTGGTTTAGCATTGGTAGATTTGCTCTCGAAAAATGCATACGATGAAATAAACTTGTTGAGATGTCAACCATCACATGGTTGGATAGATAATGAAATTGTTCAGAATAGATTTGCTGAGTTCAAAGAAGAACTTAAGGAGATTCAGATAAGGATCTTGCAAAGAAATAAAGATCCTAAGCTCAAGAATAGGCGTGTCCCTGCAAAAATTGACCATAATATTTTGTATCCTAAGATGCCGAGTTCCGGATCAAGAAGATGGAATCATGGGAAGAGGATTGTCTTATGA 2589 0.3847 MEVPTKPSSGISKWQCSSTKSKILNNFNPICQAVQKLTLKGKFVITLNQNKSIPGKSISVQIYSGTEVDPNTSKGWLSEKAYFRECGSKKHRHDDVDVDDAQTKIKTYKIKIHVDAYFGTPRAFVIQNKNKKKFYLLSASIETCTNRIIHFDCNSWIYPIKKTRFDRLFFSNRCYVPSQTPRALLELRNEELDKLRGNGMDERKEWDRIYDYDCYNDLGDPDKGSEHFRPVLGGSRLYPYPRRVRTGRKNSTSGTSRSQATSFDIYVPSDETFSPNKLKELKSNSIQAIVQLLSSKTESLPQQSSRSVDSFEAILNMLSSNRNQTIEGWIRDNLKKLVPNEDLKEITHAIKENHLHGPIPQNIYENEWAWNDDMEFGRQMLAGTHPIRIRCLMTFPPQNKYGVQSSIKQSTIEQMLEGWTLPQALEQGRIFMLDHHDYLMPYLNRINANGVCAYASRTLLFLRSDGMLKPLTIELSLPGSSLALEIHRIFLPSKQGTQAALWQLAKAHVLANDAFYHLLVSHWLYTHAVVEPFIIATKRRLSVMHPIHKILNPHFKDTMHINALTRHILINSGGILEKILFPGETCMQITCDLYKEWKFTEQGLPADLLKRGMAVESLDENNPNGIQLLMLDYPYAVDGLEIWAAIKSWVNDFCSFFYKDNEAIVADVELQAWWSEIRSIGHGDNHNDTWWYQMTTLSNLVEAITTLIWIASARHAIINHQKHSHNDNSPTLCRKFIPVEGTVEFGEFLKDPDKFFLKMLPDRFETGLGLALVDLLSKNAYDEINLLRCQPSHGWIDNEIVQNRFAEFKEELKEIQIRILQRNKDPKLKNRRVPAKIDHNILYPKMPSSGSRRWNHGKRIVL 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03546 862 ProSitePatterns Lipoxygenases iron-binding region signature 2. 544 554 IPR020834 GO:0016702|GO:0046872
Vivi7g03546 862 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 47 175 IPR036392 GO:0005515
Vivi7g03546 862 MobiDBLite consensus disorder prediction 242 261 - -
Vivi7g03546 862 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 174 860 IPR013819 GO:0016702|GO:0046872
Vivi7g03546 862 PRINTS Lipoxygenase signature 499 516 IPR013819 GO:0016702|GO:0046872
Vivi7g03546 862 PRINTS Lipoxygenase signature 517 534 IPR013819 GO:0016702|GO:0046872
Vivi7g03546 862 PRINTS Lipoxygenase signature 537 557 IPR013819 GO:0016702|GO:0046872
Vivi7g03546 862 PANTHER LIPOXYGENASE 40 848 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vivi7g03546 862 Gene3D - 194 294 - -
Vivi7g03546 862 Gene3D - 387 513 - -
Vivi7g03546 862 SMART LH2_4 35 172 IPR001024 GO:0005515
Vivi7g03546 862 MobiDBLite consensus disorder prediction 246 261 - -
Vivi7g03546 862 SUPERFAMILY Lipoxigenase 176 846 IPR036226 -
Vivi7g03546 862 Gene3D - 295 386 IPR027433 -
Vivi7g03546 862 Gene3D PLAT/LH2 domain 29 193 - -
Vivi7g03546 862 ProSiteProfiles PLAT domain profile. 56 171 IPR001024 GO:0005515
Vivi7g03546 862 PRINTS Plant lipoxygenase signature 239 258 IPR001246 GO:0016491
Vivi7g03546 862 PRINTS Plant lipoxygenase signature 454 478 IPR001246 GO:0016491
Vivi7g03546 862 PRINTS Plant lipoxygenase signature 773 787 IPR001246 GO:0016491
Vivi7g03546 862 PRINTS Plant lipoxygenase signature 355 371 IPR001246 GO:0016491
Vivi7g03546 862 PRINTS Plant lipoxygenase signature 141 159 IPR001246 GO:0016491
Vivi7g03546 862 PRINTS Plant lipoxygenase signature 167 188 IPR001246 GO:0016491
Vivi7g03546 862 PRINTS Plant lipoxygenase signature 206 222 IPR001246 GO:0016491
Vivi7g03546 862 Pfam Lipoxygenase 184 844 IPR013819 GO:0016702|GO:0046872
Vivi7g03546 862 Coils Coil 798 818 - -
Vivi7g03546 862 Gene3D - 515 854 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03546 Vivi-Chr7 101160876 101164374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03546 37 844 Acyl Lipid Metabolism Gene Families AT3G22400 43.201 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03546 K00454 - gmx:100793997 1316.21