Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03263 ATGCTCCATTCATTCAGTTACACTTTCACATTTCTCTTCACTACTCTTCTCTTCACATCATCATCATCAACATCTTCACACATTGCTTCACCACCAGCCACCAAAATATTCATCACAAACCACAACATTCAAAGCTTCACCAATGCTGGTAAAGGCAACATCATCACAGGAATATCACAATTCAAAAGGTACCTCTCTCGTTTTGGTTACCTTAAAAACAACAAATCATTCAACGACGAATTTGATGCGAGTTTCGAATCAGCTCTCATCAAATACCAAAGGAATCTTGGACTGCAAGTAACTGGAAAATTCGACTCTGACACACTTTCTCAAATGATCACACCAAGATGCGGCGTCCCTGACACAACCAACACTCATCATCACCATCATAATGATGATATTCATAACATGACACATTTTGTTTATTTTCCTGGAAAACCAAGATGGTCACGTGACAATGACATGCCAATCACACTAACCTATAGCTTCTCACGTGACTACATGATACATAGTTTGAGCTTACAAGAGATAAGAAAAACTTTCAAAAGAGCATTCTCTAAATGGAGTATTGTCATTCCTGTAATTTTCCTCGAATCCAAGGATTACGGCTTCGCAGACATAAAAATAGGGTTTTATAGCGGTGACCATGGCGACGGTGAACCATTTGATGGTGTTCTCGGTGTGTTAGCACATTCGTTCTCCCCGGAGATTGGAAGACTCCACCTCGATGCGGCCGAGACATGGGCGGTTGATTTCGGAGTAACGAAATCGGAAGTGGCAGTTGATTTGGAGTCAGTTGCTACACATGAGATTGGACATTTGTTGGGTTTGTCACATAGTAGTGTGAGAGAGGCAGTGATGTATCCAAGTTTAAGGCCAAGAGATAGAAGAGCTGATTTGAATATTGATGATATCAAAGGTGTGCAATCTCTATATGGTTCTAATCCTAATTTTAGATCTCAGTGGTCATTGGAATCTGATATTTCCACTAATCATGCTGCAAAGTTTACTTTTAGGTTGTCTATTATTGGTTTCACTATTGTAATTGCATTATTCCTATAG 1062 0.3964 MLHSFSYTFTFLFTTLLFTSSSSTSSHIASPPATKIFITNHNIQSFTNAGKGNIITGISQFKRYLSRFGYLKNNKSFNDEFDASFESALIKYQRNLGLQVTGKFDSDTLSQMITPRCGVPDTTNTHHHHHNDDIHNMTHFVYFPGKPRWSRDNDMPITLTYSFSRDYMIHSLSLQEIRKTFKRAFSKWSIVIPVIFLESKDYGFADIKIGFYSGDHGDGEPFDGVLGVLAHSFSPEIGRLHLDAAETWAVDFGVTKSEVAVDLESVATHEIGHLLGLSHSSVREAVMYPSLRPRDRRADLNIDDIKGVQSLYGSNPNFRSQWSLESDISTNHAAKFTFRLSIIGFTIVIALFL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03263 353 PRINTS Matrixin signature 266 291 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vivi7g03263 353 PRINTS Matrixin signature 205 233 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vivi7g03263 353 PRINTS Matrixin signature 112 125 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vivi7g03263 353 PRINTS Matrixin signature 181 196 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vivi7g03263 353 PRINTS Matrixin signature 300 313 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vivi7g03263 353 PANTHER MATRIX METALLOPROTEINASE 42 317 - -
Vivi7g03263 353 SUPERFAMILY PGBD-like 57 122 IPR036365 -
Vivi7g03263 353 Pfam Putative peptidoglycan binding domain 59 112 IPR002477 -
Vivi7g03263 353 CDD ZnMc_MMP 148 313 IPR033739 GO:0008237|GO:0008270
Vivi7g03263 353 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 141 316 - -
Vivi7g03263 353 SMART col_5 145 314 IPR006026 GO:0006508|GO:0008237|GO:0008270
Vivi7g03263 353 Gene3D Collagenase (Catalytic Domain) 48 319 IPR024079 GO:0008237
Vivi7g03263 353 FunFam Metalloendoproteinase 1 48 318 - -
Vivi7g03263 353 Pfam Matrixin 153 313 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03263 Vivi-Chr7 98034435 98035599 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03263 - K07999 gmx:100781237 465.692