Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi7g03257 | ATGGGAAAGATTCCTCCTTCATTCCGTTCCGCACTCTCAAACCCAAACCTAATCAAACCATCTTCATCGCTTCCATCTTCTTCCAAACCCCGCCATTTCCCCAACAAAACCCCCTCCAATTTCCCCGCTAAATCTCGAAAACCCCAACAACAACAACAACAACAACCTCAACCTCCAAAACCCTTATCCCCATTCAAATCCCCAAACCTCCAAGACGCTAAAACCCTTTTCAATTCCATCGTTAACTCCTCAAATGCCCCCAATGATTTCCGCTTCCATAACTCCCTTCTTCAATCCTACGCTTCAATTTCCACCATTAACGATTCCATCGCTTTTCTCCGTCACATGACGAAAACTCATCCTTTATTCTCCCCTGAGAAATCCACTTACCATATCCTTCTTACCCAATCCTGCAAATCCGCTGATTCCGCTGATTCCACTGATTCCACTCTTGCCCCAATTCATCAAACCCTAAATTTGATGGTGTCTGATGGTGTAAGCCCTGATAAAGTTACTGTTGATTTAGCGGTCCGGTCACTTTGTTCGGTTAATCGTGTAGATGACGCGGTTGAGTTGATTAAAGAGTTGTCTTTGAAGCATTGTGTACCTGACATTTACACTTTCAATTTCCTTGTTAAGAATCTCTGTAAGTGCCGTACGTTGAGCTCTGTTTATAGTTTTATTGAAGAAATGCGTAGTAAATTTGAGGTGAAGCCTGATCTTGTTACTTATACGATTCTCATTGATAATGTGTGTAACACTAAGAATTTGCGCGAGGCGATGAGGTTGGTGAAGGTTCTCCACGAGGAAGGTTTTAAGCCGGATTGCTTTGTTTATAATACAATTATGAAAGGTTATTGTATGCTGAGTAGAGGGAGTGAGGCGATTGAGGTTTATAATCAGATGAAGGAGAATGGGGTGGAGCCGGATCTTGTTACTTATAATACGTTGATTTATGGGTTATCGAAATCCGGCCGGGTCACTGAAGCTAAGAAGTTGTTGCGTGTTATGGCGGAAAAGGGTCATTTTCCTGATGAGGTGACTTATACGTCTCTGATGAATGGGATGTGCAGGAAAGGTGAGACCTTGGCTGCATTGGCGTTGTTGGAAGAGATGGAAATGAAGGGCTGCAGTCCGAATTCATGCACGTATAACACGCTGCTACATGGGTTGTGTAAGTCTAGGCTGTTTGATAAGGCCATGGAATTGTATGAAATGATGAAATCGGATGGTCTGAAGCTTGATATGGCTTCTTATGCTACGTTTGTCAGGACTTTATGTAGAGTTGGGAGAATTGCGGATGCTTATGAAGTATTTGACTATGCAGTCGAAAGTAAGAGTTTGACAGACGTTGCTGCTTACACAACATTGGAGAGCACACTTAAATGGTTCCTAAAAGCAAAAGAAGAAGGCCTTAAAGTTTAA | 1425 | 0.4253 | MGKIPPSFRSALSNPNLIKPSSSLPSSSKPRHFPNKTPSNFPAKSRKPQQQQQQQPQPPKPLSPFKSPNLQDAKTLFNSIVNSSNAPNDFRFHNSLLQSYASISTINDSIAFLRHMTKTHPLFSPEKSTYHILLTQSCKSADSADSTDSTLAPIHQTLNLMVSDGVSPDKVTVDLAVRSLCSVNRVDDAVELIKELSLKHCVPDIYTFNFLVKNLCKCRTLSSVYSFIEEMRSKFEVKPDLVTYTILIDNVCNTKNLREAMRLVKVLHEEGFKPDCFVYNTIMKGYCMLSRGSEAIEVYNQMKENGVEPDLVTYNTLIYGLSKSGRVTEAKKLLRVMAEKGHFPDEVTYTSLMNGMCRKGETLAALALLEEMEMKGCSPNSCTYNTLLHGLCKSRLFDKAMELYEMMKSDGLKLDMASYATFVRTLCRVGRIADAYEVFDYAVESKSLTDVAAYTTLESTLKWFLKAKEEGLKV | 474 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi7g03257 | 474 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 415 | 449 | IPR002885 | - | |
| Vivi7g03257 | 474 | MobiDBLite | consensus disorder prediction | 1 | 69 | - | - | |
| Vivi7g03257 | 474 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 310 | 344 | IPR002885 | - | |
| Vivi7g03257 | 474 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL | 208 | 460 | - | - | |
| Vivi7g03257 | 474 | Gene3D | Tetratricopeptide repeat domain | 65 | 221 | IPR011990 | GO:0005515 | |
| Vivi7g03257 | 474 | Pfam | PPR repeat family | 239 | 287 | IPR002885 | - | |
| Vivi7g03257 | 474 | NCBIfam | pentatricopeptide repeat | 177 | 205 | IPR002885 | - | |
| Vivi7g03257 | 474 | NCBIfam | pentatricopeptide repeat | 347 | 381 | IPR002885 | - | |
| Vivi7g03257 | 474 | NCBIfam | pentatricopeptide repeat | 312 | 346 | IPR002885 | - | |
| Vivi7g03257 | 474 | NCBIfam | pentatricopeptide repeat | 382 | 415 | IPR002885 | - | |
| Vivi7g03257 | 474 | NCBIfam | pentatricopeptide repeat | 278 | 310 | IPR002885 | - | |
| Vivi7g03257 | 474 | NCBIfam | pentatricopeptide repeat | 242 | 276 | IPR002885 | - | |
| Vivi7g03257 | 474 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 345 | 379 | IPR002885 | - | |
| Vivi7g03257 | 474 | Pfam | PPR repeat | 206 | 234 | IPR002885 | - | |
| Vivi7g03257 | 474 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 240 | 274 | IPR002885 | - | |
| Vivi7g03257 | 474 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 275 | 309 | IPR002885 | - | |
| Vivi7g03257 | 474 | Gene3D | Tetratricopeptide repeat domain | 373 | 446 | IPR011990 | GO:0005515 | |
| Vivi7g03257 | 474 | Gene3D | Tetratricopeptide repeat domain | 304 | 372 | IPR011990 | GO:0005515 | |
| Vivi7g03257 | 474 | Gene3D | Tetratricopeptide repeat domain | 222 | 303 | IPR011990 | GO:0005515 | |
| Vivi7g03257 | 474 | Pfam | Pentacotripeptide-repeat region of PRORP | 294 | 446 | IPR033443 | - | |
| Vivi7g03257 | 474 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 380 | 414 | IPR002885 | - | |
| Vivi7g03257 | 474 | MobiDBLite | consensus disorder prediction | 9 | 53 | - | - | |
| Vivi7g03257 | 474 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 169 | 203 | IPR002885 | - | |
| Vivi7g03257 | 474 | SUPERFAMILY | HCP-like | 254 | 444 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi7g03257 | 87 | 469 | Glycosyltransferase | AT1G05670 | 27.676 | 4.03e-40 | 152 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi7g03257 | - | - | qsa:O6P43_033537 | 644.039 |