Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02561 ATGGCGAAAGTCGTGTACATGGCTTTACCTTTCCTCGCACAACCACACAAAACCACCAAAGCTTCTTCTTCATCATCATCATCTTCTTCAAATCCATTGAAGCTTCCACATAGAACACGCAGCACCAACATATCCATTCCATCATCTACCAACGTTGCTGCTAACCGTTCTCTTAAACCCCAGAAGCTTAATTCAGATGTTTCTCCTCACAGGGCTGTGTCTGCGGTGAGATTGATGAGAATTGAACTTGGTGGTGCTTTTGCTGACCTTCTTAATGAGAAAGGGAAAGGTTCTGGTGAAAATGAGATGGGATATGTTCAAAGAACTCTTGGCTTTCGCACTCGAGAATTGAATAATCAAGACCTCAGATTGGTTACAGACATTGTTGGGGGTACAATTCGTTGGAGGAGATACCTTGATCATTTAATCAGTTCATTGTGTCATGATAAAGATATATCTAGTATGGAGCCTCTTCTCTTACAGATTCTACGAATTGGCTTCTATGAGATTCTCAAATTAGACATGCCACCTTATGCTGTTGTAGATGAGAATGTGCAGCTTGCTAAAGCTGCTCTCAGGCCGGGTGCAGGGAACTTGGTCAATGGAATCCTCCGAAAGCTAGTTGTGCTCAAGGAAAATGAAACTCTGCCTTTACCCGAAGTAGAGGGCGATGATCGTTCTCAAGCACGTGCTCTGGCAACTCTCTACTCACATCCAGTTTGGATCGTCAGGAGATGGGCAAAGTATCTTGGTCAGGAAGAAACCATTAAATTGATGATATGGAACAATAGTGAACCGAGTTATAGCTTAAGAGCAAATCGGGCAATAGGTTTTTCAAGAGATGACCTTGTGACACAGCTTAATACGTTGAATGTCCCACACAAGCTTTCTTTGCATTTGGATGATTTTGTTCGCATCAAAACTGGGTTGCAGACCATCATTCACGCCGGCCTACTCAAAGAGGGTTTATGTTCCGTTCAGGACGAGAGTGCAGGTCTGATAGTCTCTATTGTGGATCCTCAACCCGGTGAAACCATCGTTGATTGTTGTGCTGCTCCTGGTGGAAAGACCCTCTACATGGCCTCTCATTTAAATGGACAAGGCATGGTATACGCAATTGATGTAAATAGTGGTAGGTTGAGAATTCTTAAAGAGACAGCAAAGTTGCATCAAGTAGATGGTGTTGTTACCACTGTTCATGCCGATCTTCGTACATTGACTGACGGTGAACCACTTAAGAGTAACAAAGTTTTGTTGGACGCACCGTGCTCAGGGCTCGGTGTTCTTTCAAAGAGAGCGGACTTACGTTGGAATAGAAAGCTGAAAGATATGGAAGAATTGAAGGAATTACAGGATGAACTCCTCGATGCAGCATCCACATTGGTAAAACCTGGGGGAGTATTAGTATATAGTACATGCTCCATAGATCCTGAAGAGAATGATGAGAGGGTAGCTGCATTTCTATCAAGACATCATGATTTTCGCGTTGATCCTGTAGACAGATATGTTCCACCTGATTTCGTGACGCCAAATGGTTTCTATTTCTCCAACCCAGTTAAACATTCACTTGATGGCTCTTTTGCTGCTCGTTTGGTACGCGCTTTGTAA 1608 0.4328 MAKVVYMALPFLAQPHKTTKASSSSSSSSSNPLKLPHRTRSTNISIPSSTNVAANRSLKPQKLNSDVSPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNNQDLRLVTDIVGGTIRWRRYLDHLISSLCHDKDISSMEPLLLQILRIGFYEILKLDMPPYAVVDENVQLAKAALRPGAGNLVNGILRKLVVLKENETLPLPEVEGDDRSQARALATLYSHPVWIVRRWAKYLGQEETIKLMIWNNSEPSYSLRANRAIGFSRDDLVTQLNTLNVPHKLSLHLDDFVRIKTGLQTIIHAGLLKEGLCSVQDESAGLIVSIVDPQPGETIVDCCAAPGGKTLYMASHLNGQGMVYAIDVNSGRLRILKETAKLHQVDGVVTTVHADLRTLTDGEPLKSNKVLLDAPCSGLGVLSKRADLRWNRKLKDMEELKELQDELLDAASTLVKPGGVLVYSTCSIDPEENDERVAAFLSRHHDFRVDPVDRYVPPDFVTPNGFYFSNPVKHSLDGSFAARLVRAL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02561 535 PRINTS Viridiplantae FMU-related RCMT signature 215 228 IPR023268 -
Vivi7g02561 535 PRINTS Viridiplantae FMU-related RCMT signature 100 116 IPR023268 -
Vivi7g02561 535 PRINTS Viridiplantae FMU-related RCMT signature 492 504 IPR023268 -
Vivi7g02561 535 PRINTS Viridiplantae FMU-related RCMT signature 76 99 IPR023268 -
Vivi7g02561 535 Pfam NusB family 102 208 IPR006027 GO:0003723|GO:0006355
Vivi7g02561 535 FunFam Ribosomal RNA small subunit methyltransferase B 68 217 - -
Vivi7g02561 535 Gene3D - 87 220 IPR035926 -
Vivi7g02561 535 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 229 533 IPR029063 -
Vivi7g02561 535 CDD AdoMet_MTases 345 471 - -
Vivi7g02561 535 PRINTS RNA (C5-cytosine) methyltransferase signature 516 533 IPR023267 GO:0001510
Vivi7g02561 535 PRINTS RNA (C5-cytosine) methyltransferase signature 318 332 IPR023267 GO:0001510
Vivi7g02561 535 PRINTS RNA (C5-cytosine) methyltransferase signature 347 357 IPR023267 GO:0001510
Vivi7g02561 535 PRINTS RNA (C5-cytosine) methyltransferase signature 465 481 IPR023267 GO:0001510
Vivi7g02561 535 PRINTS RNA (C5-cytosine) methyltransferase signature 415 427 IPR023267 GO:0001510
Vivi7g02561 535 Pfam 16S rRNA methyltransferase RsmB/F 337 531 IPR001678 GO:0008168
Vivi7g02561 535 SUPERFAMILY NusB-like 107 242 IPR035926 -
Vivi7g02561 535 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 196 533 IPR023267 GO:0001510
Vivi7g02561 535 FunFam Ribosomal RNA small subunit methyltransferase B 330 534 - -
Vivi7g02561 535 NCBIfam 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 112 533 IPR004573 GO:0006364|GO:0008649
Vivi7g02561 535 Gene3D Vaccinia Virus protein VP39 333 534 IPR029063 -
Vivi7g02561 535 Gene3D Sun protein; domain 3 225 331 - -
Vivi7g02561 535 FunFam 16S rRNA (Cytosine(967)-C(5))-methyltransferase RsmB 225 329 - -
Vivi7g02561 535 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 258 534 IPR001678 GO:0008168
Vivi7g02561 535 MobiDBLite consensus disorder prediction 16 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02561 Vivi-Chr7 89534821 89538929 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02561 K03500 - gmx:100779327 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g02561 7 89534821 89538929 Vivi7g02561 7 89534821 89538929 ECH