Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02224 ATGGGAGATCAAATGGCGAAAGCAGAGGATTTTGAGAATAAGGCAGAAAAAAAGCTGAGCAGTTGGGGCATGTTTGGTTCCAAATTTGAGGATGCTGCTGATCTATTTGATAAATCTGCCAATTCCTATAAGCTCTCCAAATCATGGGACAAAGCAGGATCCACTTACATTAAGTTGGCAAATTGCCATTTGAAGTTGGAAAGCAAGCATGAAGCTGCCTCGGCTTATGTTGATGCTGCACATTGCTACAAAAAAGTTAATATGAATGATGCTGTATCTTGTTTAGACAATGCTGTAAATATTTTCTGTGACATTGGAAGAATTTCTATGGCGGCTAGATATTTGAAGGAAATAGCTGAACTATGTGAGTCCGAACAAAATATTGAGAAGGCCCTGGTTTACTATGAAAAATCAGCTGACTTTTATGAAAGCGAGGAAGTGACAACATCTGCAAACCAGTGCAAGCAAAAAGTTGCTCAATTTTCTGCTCAGCTAGAACAATATCAGAAATCGATTGAAATTTATGAAGCAATAGCTCGCCAGTCTCTCAACAATAACTTGTTGAAGTATGGAGTTAAAGGACATCTTCTTAATGCTGGGATATGTGAACTTTGTAAAGGTGACGTTGTTGCTATTTCCAAGGCTTTAGAACGATATCAGGAATTGGATCCAACGTTTTCAGGAACACGTGAATATAAACTCTTGGCGGATGTTGCTGCTGCGATTGATGAAGAAGACGTTGCAAAGTTTACCGAAGCTGTCAAAGAGTTTGATAGCATGACTCCTTTGGATTCTTGGAAAACAACACTTTTTCTGAGGGTGAAGGAAAAACTGAAAGCCAAAGAACTTGAGGAGGATGATCTTACTTGA 870 0.3897 MGDQMAKAEDFENKAEKKLSSWGMFGSKFEDAADLFDKSANSYKLSKSWDKAGSTYIKLANCHLKLESKHEAASAYVDAAHCYKKVNMNDAVSCLDNAVNIFCDIGRISMAARYLKEIAELCESEQNIEKALVYYEKSADFYESEEVTTSANQCKQKVAQFSAQLEQYQKSIEIYEAIARQSLNNNLLKYGVKGHLLNAGICELCKGDVVAISKALERYQELDPTFSGTREYKLLADVAAAIDEEDVAKFTEAVKEFDSMTPLDSWKTTLFLRVKEKLKAKELEEDDLT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02224 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 5 279 IPR000744 GO:0006886
Vivi7g02224 289 FunFam Alpha-soluble NSF attachment protein-like 6 285 - -
Vivi7g02224 289 Gene3D Tetratricopeptide repeat domain 5 288 IPR011990 GO:0005515
Vivi7g02224 289 Pfam Soluble NSF attachment protein, SNAP 7 278 - -
Vivi7g02224 289 Coils Coil 151 185 - -
Vivi7g02224 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Vivi7g02224 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Vivi7g02224 289 PRINTS NSF attachment protein signature 119 136 IPR000744 GO:0006886
Vivi7g02224 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Vivi7g02224 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Vivi7g02224 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Vivi7g02224 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Vivi7g02224 289 SUPERFAMILY TPR-like 6 280 IPR011990 GO:0005515
Vivi7g02224 289 CDD SNAP 7 278 IPR000744 GO:0006886
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02224 Vivi-Chr7 85103519 85106163 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02224 K15296 - gmx:100794564 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04389 3 78953631 78962336 Vivi7g02224 7 85103519 85106163 ECH
Vivi7g02224 7 85103519 85106163 Vivi7g02224 7 85103519 85106163 ECH
Vivi3g04389 3 78953631 78962336 Vivi7g02224 7 85103519 85106163 PCT