Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01341 ATGGATATTCAAACTATTCATTCAATCTTAGCAAAATCACTCACCATTCTTGCCTGGCCTCCATTTAGTTTGCTTTGTCCCTTATATGCTTCTTTTAGGGCATTGGAGAGTGATTGTCGTTCCAGTAATCAGCGATGTCTTGCTTTTTGGGTTCTTTTTTCTTTCTCTATGATCATGGAATCTCAGTTTCCACTCTTATTTAACTGGTTCCAATGGTGGCGTCATGTGAAAGCCGTCACAACTCTCCTGTTGTTAATACCTTATTTTGGTGCTGCGCCGTACTTCTACAAGCTCTTAGTTAAATATTACTCTACGAGGTACATATTTGCATGGACGATGAATATCTTCAATCTGAAAATCACACAATTTGAATTGGATGAGGACAGAGAAACTCTTTCAGAATTGGACGAGGACAGAGAAATATTTTATGACGCGGTTGGTGATAGCAAAATAGTTGAGATCTCTGGTCAGACAATTATTACAAATCATTTTCAAGAGAAGAAACTCTTCATATATCAGGGAAGAGAGGGTCTTACTGGTTGTGAAAACACGAAAATCGGTTATACAAATCGAAAGAAAGTCCAGAAGGAATGGAGCTGTGCTTTATGTCAAATTAGTACTACAAGTGAAAATTGCTTAAGGTCACATCTTCAAGGGAAGCAACACAAGACTAAGGAAAACGAGCTTCGGGTCGAGTTACATGCAACAGATATACCGCACGTGCTACCCTTTACGCAGGAAAGAATCAAAGGAATGGTTCTACTTAGGAATCTCAACAAAATTGCAAACATTCTGAATCCTGTTTCGAGATCCGTAGTGTGGTGTGAATGGAAAAAGCCGGAATTTGGATGGACAAAACTGAACACCGACGGTTCTGTAAATAAAGAAACCGCTGGTTTTGGTGGTCTGCTTCGTGATTACCGGGGCGAACCAATTTGCGCATTTGTCTCGAAAGCTCCTCGAGGAGATATTTTCTTGGTTGAACTTTGGGCTATATGGAGAGGCCTTGTTCTCTCCTTTGGTCTTGGGATTAAATCAATATGGGTGGAATCAGATTCCGCAAGTGTTGTCAATACAATCAATAGAATCCAACATTGTCCAAAGGCTGAAACATGTTTGAAACAAATCTGGAAACTTTTGAGTAAGTTTGACAAGTATCGGATTTCTCACTCGTGGCGCGAAACTAATAGAGCTGCAGATCATCTTGCAAAGATGGCTCTTTGTGGAAACGATGTGGTTTTGTGGCCGGTTGATTTTTCAGATAGCCTTTGTAATATCATTCAAGAAGATGCTAGAGGAACCAAATATATGAGACGATGA 1320 0.3992 MDIQTIHSILAKSLTILAWPPFSLLCPLYASFRALESDCRSSNQRCLAFWVLFSFSMIMESQFPLLFNWFQWWRHVKAVTTLLLLIPYFGAAPYFYKLLVKYYSTRYIFAWTMNIFNLKITQFELDEDRETLSELDEDREIFYDAVGDSKIVEISGQTIITNHFQEKKLFIYQGREGLTGCENTKIGYTNRKKVQKEWSCALCQISTTSENCLRSHLQGKQHKTKENELRVELHATDIPHVLPFTQERIKGMVLLRNLNKIANILNPVSRSVVWCEWKKPEFGWTKLNTDGSVNKETAGFGGLLRDYRGEPICAFVSKAPRGDIFLVELWAIWRGLVLSFGLGIKSIWVESDSASVVNTINRIQHCPKAETCLKQIWKLLSKFDKYRISHSWRETNRAADHLAKMALCGNDVVLWPVDFSDSLCNIIQEDARGTKYMRR 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01341 439 Pfam Reverse transcriptase-like 288 406 IPR002156 GO:0003676|GO:0004523
Vivi7g01341 439 SUPERFAMILY Ribonuclease H-like 284 414 IPR012337 -
Vivi7g01341 439 CDD RNase_H_like 287 404 IPR044730 -
Vivi7g01341 439 SMART ZnF_U1_5 195 229 IPR003604 GO:0003676|GO:0008270
Vivi7g01341 439 Pfam Zinc-finger of C2H2 type 198 222 - -
Vivi7g01341 439 Pfam TB2/DP1, HVA22 family 27 101 IPR004345 -
Vivi7g01341 439 Gene3D Classic Zinc Finger 182 228 - -
Vivi7g01341 439 PANTHER OS05G0353850 PROTEIN 265 421 - -
Vivi7g01341 439 SUPERFAMILY beta-beta-alpha zinc fingers 180 231 IPR036236 -
Vivi7g01341 439 Gene3D - 284 407 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01341 Vivi-Chr7 67886543 67889010 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01341 276 407 Glycoside Hydrolase AT2G33160 28.467 1.20e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01341 - - gmx:102661917 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g01341 7 67886543 67889010 Vivi7g01341 7 67886543 67889010 ECH