Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01170 ATGTCAAGTGGTGGATGCAGCATAGTTTGGTTCAGAAGAGATCTGAGGGTAGAGGATAACCCTGCACTTGCAGCAGGAGTTAGAGCAGGTGCTGTGGTTGGTGTATTTATCTGGGCACCTGAGGAAGAAGGACAATATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAGAACAGTTTGTCTCATCTTGATTCATCTTTGAGGAATCTTGGTACTCCTCTTGTTACCAAAAGATCAACTGATAGTATTTCTTCTTTGCTTGAGGTTGTTAAGTCCACTGGAGCCACTCAAATCTTTTTCAACCATTTATATGATCCATTGTCACTTGTGAGGGATCATAGAGCGAAGGAAATTCTAACGGCTCAAGGAATTACCGTACGATCGTACAACTCGGATTTATTGTATGAACCATGGGATGTGAATGACGAACATGGCCAACCATTCACAACTTTTGATTCTTTTTGGGAAAGATGCCTTAGCATGCCTTATGACCCACAAGCACCTCTTCTCCCACCTAAAAGAATTATTCCAGGTGATATATCAAGATGTCCTTCTGATACATTGGTGTTTGAAGATGAATTAGAGAAATCAAGCAACGCGCTTCTTGCTCGAGCATGGTCACCAGGGTGGAGCAATGCGAACAAGGCATTGACGACATTTATAAACGGTCCACTGATCGAGTACTCTGTGAACCGCAGGAAAGCGGACAGCGCCACGACCTCATTTCTCTCCCCACATTTGCATTTCGGAGAAGTTAGTGTCAAGAAAGTATTCCATCTCGTCCGAATTAAGCAAGTCTTTTGGGCGAACGAAGGAAACAAAGCTGGTGAAGAAAGCGTTAACTTGTTTCTCAAGTCAATTGGTCTTAGAGAGTATTCAAGGTACATCAGTTTCAACCACCCTTATAGTCACGAAAGGCCACTTCTTGGACACCTTAAGTTTTTCCCTTGGGTGGTCGACGAAGGATATTTTAAGGCTTGGAGACAAGGAAGGACGGGTTACCCTTTGGTGGATGCTGGAATGAGAGAGTTGTGGGCTACGGGTTGGCTTCATGATCGAATTCGCGTTGTCGTTTCGAGTTTCTTTGTTAAAGTTTTGCAGCTTCCTTGGAGATGGGGAATGAAATATTTTTGGGACACCCTTTTGGATGCTGATCTTGAGAGTGATGCTCTTGGTTGGCAGTATATATCTGGTACTTTACCTGACGGTCGTGAGTTCGACAGAATTGATAATCCACAGTTTGAGGGATACAAATGCGATCCAAACGGAGAATATGTGCGACGCTGGCTACCGGAACTTGCAAGACTACCGACTGAATGGATACATCATCCTTGGAATGCACCGGAATCAGTACTCCAAGCTGCAGGTATTGAACTTGGCTCAAACTACCCTCTTCCGATTGTTGAAATAGACGCCGCAACAGTGAGACTGGAAGAAGCGCTTATACAAATGTGGCAACTAGAAGCAGCTTCAAGAACTGCCGCCGAAAACGGAACCGAAGAAGGTCTCGGAGACTCTACTGAAACCGCCCCTATTGCTTTTCCTCAAGACATACAAATGGAGGAAAGACATGAACCTGTTAGGAACAATCCACTTCACGGTACCCGGCGCTACCAGGATCAAATGGTGCCAAGTATGACCTATTCTAGAGTGAGAGCGGAAGAGGAAGAAACTTCTTCAGTTAGAAACTCAGCAGGAGACAGCAGAGCTGAAGTGCCAACAAATGCAAATGCACAGCAAAATGGACATCAAAATGGACGAGAACCAATGGACCAAGGAATGTTGCAGAATGTAAATAGAAACACTAGACAACGTCGTAATAATACTACAACTACATTTTGGCTGAGAAATGCAGCTGAAGATTCAACAGCGGAATCTTCGAGTAGTACGAGGAGAGAAAGAGACGGAGGTGTAGTTCCGGAGTGGTCGCCACAGGCTTCTAACTTCTCAGATCAATTTGTAGATGATGAAAATGGTATAGGAGCCACTTCACCTTACTTGCAGAGGCATCCACAGTCACACCAAATGATGAGTTGGACACGCCTACCTCAAACTGGATAA 2061 0.4454 MSSGGCSIVWFRRDLRVEDNPALAAGVRAGAVVGVFIWAPEEEGQYYPGRVSRWWLKNSLSHLDSSLRNLGTPLVTKRSTDSISSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEILTAQGITVRSYNSDLLYEPWDVNDEHGQPFTTFDSFWERCLSMPYDPQAPLLPPKRIIPGDISRCPSDTLVFEDELEKSSNALLARAWSPGWSNANKALTTFINGPLIEYSVNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAATVRLEEALIQMWQLEAASRTAAENGTEEGLGDSTETAPIAFPQDIQMEERHEPVRNNPLHGTRRYQDQMVPSMTYSRVRAEEEETSSVRNSAGDSRAEVPTNANAQQNGHQNGREPMDQGMLQNVNRNTRQRRNNTTTTFWLRNAAEDSTAESSSSTRRERDGGVVPEWSPQASNFSDQFVDDENGIGATSPYLQRHPQSHQMMSWTRLPQTG 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01170 686 MobiDBLite consensus disorder prediction 607 625 - -
Vivi7g01170 686 PRINTS DNA photolyase signature 352 370 IPR002081 -
Vivi7g01170 686 PRINTS DNA photolyase signature 332 348 IPR002081 -
Vivi7g01170 686 PRINTS DNA photolyase signature 391 405 IPR002081 -
Vivi7g01170 686 Pfam DNA photolyase 7 163 IPR006050 -
Vivi7g01170 686 Gene3D - 134 293 - -
Vivi7g01170 686 NCBIfam cryptochrome photoreceptor 6 481 IPR014134 GO:0009785|GO:0009882
Vivi7g01170 686 MobiDBLite consensus disorder prediction 665 686 - -
Vivi7g01170 686 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Vivi7g01170 686 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Vivi7g01170 686 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Vivi7g01170 686 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 178 IPR036155 -
Vivi7g01170 686 PANTHER CRYPTOCHROME 6 490 IPR002081 -
Vivi7g01170 686 MobiDBLite consensus disorder prediction 563 590 - -
Vivi7g01170 686 FunFam Deoxyribodipyrimidine photo-lyase 301 490 - -
Vivi7g01170 686 Pfam FAD binding domain of DNA photolyase 283 479 IPR005101 -
Vivi7g01170 686 Pfam Blue/Ultraviolet sensing protein C terminal 510 631 IPR020978 -
Vivi7g01170 686 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Vivi7g01170 686 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 192 488 IPR036134 -
Vivi7g01170 686 MobiDBLite consensus disorder prediction 607 686 - -
Vivi7g01170 686 MobiDBLite consensus disorder prediction 549 590 - -
Vivi7g01170 686 Gene3D HUPs 8 206 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01170 Vivi-Chr7 60766533 60772100 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01170 K12118 - gmx:100815428 1217.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g01170 7 60766533 60772100 Vivi7g01170 7 60766533 60772100 ECH