Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01159 ATGAATGATCATCGTGATCATGAATATGATCATGATTATCATCGATTGTCTGTTGATCTTTCTGCTATGACACTTTCAGATGAAGATCATCACCGTCATCATCAACCTAACAACATCAACAACAGCAATGTTCCAAGAATCCGAGGTCGTAATGTTGTTGACTCAAACTCAAACCACAACATCAACAACATGCCTGATTTTTATGAAACTCATGCATACAACAATAACAACAACAACACTGTTGAAGATGAAACAGTGACAGCAACTTACCCACGTTATCAAAACAACATGGGTAGTCCAAAATCACTTTTTGGGGTTTCATCACTCTCTGATATCAAGTGGGGTATGCAAAAAGGTAACACCTTTGCTGGAGTTTCTCAAATGGGTTCTTCTCTTGATCTTGGAAACGGAAACACTGTTTCTTATGGTCATTATTATGGACATGGTAGAGGAAGGGTTGTTCCGGTTCAGCTTCAAAACTCATCTTATAATAACCCTTATGAACAACAACAACAACAGCGTATTGTGTATCCTTCACCACCAACAAGATCTTCTTTTGCTGCTATGGAAAACGATTTTCCTTCCAATCCTATTAATCCTATTATGTATGCTAGTCCAAATGTTAACAATGCTCCTTCATCAGCACTTTATTATCCTTCTAATAGCCATTTTCAGCTTCCTCAATCTCCTTATCCTACAAGACCTATTGAGGAACCCTTGGCTTTTAAATGTGATAATAGTTTCATTCTTCAAGAGAGGGACTGGAATTCATTCTTGGGTGGGGCTGGTGCTGGTGCTGCCTCAAAGTATTCATACTCACAGGGGGTAGTGATTCCTCAAACTTCTCATCATTTTCCTGTTAGAACTGAAAACACTCGGGCTGCTATCGTAGCTGACGATGATAATGATGTACAACAGCCTTTGATGAACTTTGGTTATTTGCCTGCTCTACAAAGTTACATGATTCAGACTGCAAAGGATCAGAATGGTGGTCGTCAGCTGCAGAAATTGGTAGAGGAAGGGAGTGTCGATGATAAGGAAATGGTGTTTACTGGTGTTATTGAGAACATTGTTGAGCTTATGATGGATCCTTTTGGGAACTATCTTGTGCAGAAGTTGCTGGAGTTTTGTAGGGAAGATCAGAGGTTGCAGATTGTTCATATGTTGACTAAGGAGCCTGGTCAGCTAGTCAGGACCTCCTTAAACACACATGGCACAAGAGTGGTTCAGGTGCTGATTTCTACCATCAAATCAAGGAGGCAAATTGCATTAGTGAGGGCTGCAATTCAACCTGCTTTTCTTGAGCTTGTCAAGGATCTCAATGGAAACCATGTCATACAACGTTGTTTGACCTGCTTTAGTGTTCAAGATAACGAGTTTATCTTTGATGCTGCAACAAAATTCTGTCTTGATGTTGCTACACATCAACATGGCTGCTGTGTGCTTCAAAGGTGCATTGATTATTCAAAGGGAAAGAGTCAAGAAAGGCTTGTCAAGGAAATCTGCAAACATGGCTTTCATCTTGCTCAAGATCCATATGGAAACTATGTTGTTCAGTACATCATCCAGATGCAGATTCCAAGTGCTATAGCCAAGTTTACTGCTCAGTTCAGGGGAAACTATGTCACCCTCTCCACTCAAAAGTTCAGCAGCCATGTGGTTGAGAAGTGCCTCAAATATATTCCTGAGACTAGAGCCAGAATTGTCCAAGAATTGTTGTCTATTCCCCGCTTCGAGTGTCTTCTCCAAGACCCGTTTGGAAACTATGTCCTTCAATGCGCCCTTGACAATACCAAGGGGTCGTTGCTTACATCTTTGGTTGACGCGGTCAGAGCGCACAAGAACTTGCGCACGAGCCCATATTGCAAGAGGACCTTCTCAAAAATCCAGCTGAAGAAGTGA 1902 0.4132 MNDHRDHEYDHDYHRLSVDLSAMTLSDEDHHRHHQPNNINNSNVPRIRGRNVVDSNSNHNINNMPDFYETHAYNNNNNNTVEDETVTATYPRYQNNMGSPKSLFGVSSLSDIKWGMQKGNTFAGVSQMGSSLDLGNGNTVSYGHYYGHGRGRVVPVQLQNSSYNNPYEQQQQQRIVYPSPPTRSSFAAMENDFPSNPINPIMYASPNVNNAPSSALYYPSNSHFQLPQSPYPTRPIEEPLAFKCDNSFILQERDWNSFLGGAGAGAASKYSYSQGVVIPQTSHHFPVRTENTRAAIVADDDNDVQQPLMNFGYLPALQSYMIQTAKDQNGGRQLQKLVEEGSVDDKEMVFTGVIENIVELMMDPFGNYLVQKLLEFCREDQRLQIVHMLTKEPGQLVRTSLNTHGTRVVQVLISTIKSRRQIALVRAAIQPAFLELVKDLNGNHVIQRCLTCFSVQDNEFIFDAATKFCLDVATHQHGCCVLQRCIDYSKGKSQERLVKEICKHGFHLAQDPYGNYVVQYIIQMQIPSAIAKFTAQFRGNYVTLSTQKFSSHVVEKCLKYIPETRARIVQELLSIPRFECLLQDPFGNYVLQCALDNTKGSLLTSLVDAVRAHKNLRTSPYCKRTFSKIQLKK 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01159 633 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 75 629 - -
Vivi7g01159 633 SUPERFAMILY ARM repeat 317 630 IPR016024 -
Vivi7g01159 633 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 292 633 IPR033133 GO:0003723
Vivi7g01159 633 MobiDBLite consensus disorder prediction 27 47 - -
Vivi7g01159 633 SMART pum_5 464 499 IPR001313 GO:0003723
Vivi7g01159 633 SMART pum_5 316 351 IPR001313 GO:0003723
Vivi7g01159 633 SMART pum_5 391 426 IPR001313 GO:0003723
Vivi7g01159 633 SMART pum_5 573 608 IPR001313 GO:0003723
Vivi7g01159 633 SMART pum_5 352 387 IPR001313 GO:0003723
Vivi7g01159 633 SMART pum_5 428 463 IPR001313 GO:0003723
Vivi7g01159 633 SMART pum_5 500 535 IPR001313 GO:0003723
Vivi7g01159 633 SMART pum_5 536 570 IPR001313 GO:0003723
Vivi7g01159 633 Pfam Pumilio-family RNA binding repeat 540 573 IPR001313 GO:0003723
Vivi7g01159 633 Pfam Pumilio-family RNA binding repeat 433 463 IPR001313 GO:0003723
Vivi7g01159 633 Pfam Pumilio-family RNA binding repeat 322 351 IPR001313 GO:0003723
Vivi7g01159 633 Pfam Pumilio-family RNA binding repeat 583 608 IPR001313 GO:0003723
Vivi7g01159 633 Pfam Pumilio-family RNA binding repeat 506 522 IPR001313 GO:0003723
Vivi7g01159 633 Pfam Pumilio-family RNA binding repeat 469 502 IPR001313 GO:0003723
Vivi7g01159 633 Pfam Pumilio-family RNA binding repeat 396 410 IPR001313 GO:0003723
Vivi7g01159 633 Pfam Pumilio-family RNA binding repeat 356 389 IPR001313 GO:0003723
Vivi7g01159 633 ProSiteProfiles Pumilio RNA-binding repeat profile. 500 535 IPR001313 GO:0003723
Vivi7g01159 633 ProSiteProfiles Pumilio RNA-binding repeat profile. 464 499 IPR001313 GO:0003723
Vivi7g01159 633 Gene3D - 309 632 IPR011989 -
Vivi7g01159 633 ProSiteProfiles Pumilio RNA-binding repeat profile. 316 351 IPR001313 GO:0003723
Vivi7g01159 633 CDD Pumilio 322 629 IPR033712 GO:0003723
Vivi7g01159 633 FunFam Pumilio homolog 9 308 633 - -
Vivi7g01159 633 ProSiteProfiles Pumilio RNA-binding repeat profile. 352 387 IPR001313 GO:0003723
Vivi7g01159 633 ProSiteProfiles Pumilio RNA-binding repeat profile. 428 463 IPR001313 GO:0003723
Vivi7g01159 633 ProSiteProfiles Pumilio RNA-binding repeat profile. 536 574 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01159 Vivi-Chr7 59795902 59798973 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01159 - - psat:127118782 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g01159 7 59795902 59798973 Vivi7g01159 7 59795902 59798973 ECH