LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi7g01072	ATGCCTCCTCTTCCGTCCTCCATTTTAGCGAAATCCGAGCTGTTCTCCCGACCTGCAAGCCACATCGTCAACCACAGTATCTCCAGCGGCGGAAGTCAGCGGCACGATCAGCAGCAGTTGGTGGTTGTTCCGACGGCTGTTGATGTGAGGATCAACGACCTCGTCGGGAACGGAATATCAGGAATACTTCAGAAGTGGGTGAACTATGGCAAAGGATGGAGGCCTAGGTGGTTCGTGCTACAGGACGGTGTTCTCTCCTATTACAAGATTCATGGACCTGATAAGATCGTAATCAATCCAGAAACGGAGAAAGGATTCAAAGTCATCGGTGACGAGTCCATGCGGATCATTTCTCGCAACAGAAATTCTCACTACTCTCAACATTGGCGAAAGCCTTTCGGGGAAATCCATCTCCAGGTTTCAACTATTCGTGAGAGCAGATCGGATGATAAACGGTTTTCCATTTTCACTGGGACAAAGACACTGCACTTAAGGGCTGAGACCCGTGAGGATCGGGTGGCATGGGTGGAGGCTTTATATGCAGTCAAAGATATGTTTCCTCGGATGTCCAACTGTGAGCTGATGGCTCCTGTGGACAATTCGGCCATTTCAACTGAAAAGTTGAGGCACCGGCTTATGGAAGAAGGTGTTAGTGAGGCCGCCATTCAGGATAGTGAGCAAATTATGAGAAATGAGTATGCAGCTCTACAAAGCCAGCTTTTGCTACTTAAGCAGAAACAGTTGGCACTAATTGATAATTTACGCCAATTGGAGACAGAGAAGGTTGACCTGGAAAACACTGTTGTTGATGAGAGCCAAAGACAAAGACAAGGGAATGGTCAAGAGGCTTCCTCTATATTGGGGCAGGAAAAGTTTAGTGCAAGTGTGTGTGGGTCTGAGGATGATAATGACAGAAATGACGCAGCAGAGGAAGGAACAGATGATGACGATGATGCCGCCTTTTTTGACACACGTGATTTTCTATCATCATCCAGTTCTTTTAAAAGTAATGGATCTGATTTTAGGGCTTCATCCTTCTCTTCAGATGATGAAGGAGTCCCGACAGTTGGATTTGAGGAGGATGTAGATCCTTGTATTAAAACTGTTGGGACCAACTACCCTCGTGTTAAGCGGCGTAAAAAATTGCCCGAACCTGTTGAGAAAGAGAAAGGCGTCAGTCTTTGGTCATTGATTAAGGATAATATTGGGAAGGATCTAACTAAAGTATGTCTCCCTGTTTATTTTAATGAACCTCTCTCCTCTCTTCAAAAATGCTGTGAAGAAATGGAGTACTCGTATCTCCTTGACCGAGCTTATGAATGGGGAAGAAGAGGCAATACCCTTATGAGGATTCTCAATGTTGCTGCTTTTGCTGTATCTGCATATGCTTCAACTGATGGAAAAATTTGCAAACCATTCAATCCATTACTGGGGGAGACATATGAGGCTGACTTTCCAGATAAAGGCTTTCGTTTCATTTCAGAGAAGGTCAGTCACCACCCTACAATAGTTGCATGTCACTGTGAGGGTACGGGCTGGAAATTTTGGGCAGATAGTAACTTAAAAAGCAAATTTTGGGGCCGATCAATTCAACTCGATCCTGTTGGTATATTGACATTAGAATTTGACGATGGGGAAGTGTTCCAGTGGAGCAAGGTTACTACATCAATATACAATCTCATTTTGGGAAAGCTGTATTGTGATCATTATGGTACAATGCGCATTCAGGGAAACGGAGCATACTCATGTAAACTGAAATTCAAGGAACAATCTATAATTGATCGCAATCCTCGCCAGGTTCAAGGTATTGTTCAGGACAGAAATGGGAAAACATTGGCTACATTAATTGGAAAGTGGGACGACAGCATGTATTATGTTAATGGTGACTATGGTGGAAAGGGAAAAGGTTATGAATCGTTGTCGGAAGCACATCTACTATGGAAGCGGAGCAAGCCTCCCAAGTTTCCTACTAGATATAACTTAACTCGTTTTGCCATCACGCTAAACGAACTTACCCCAGGATTAAAGGAAAAGCTACCACCTACGGATTCCAGGTTAAGGCCAGATCAGAGATATTTGGAAAATGGGGAGTATGAGATGGCAAATTCGGAAAAATTACGGCTAGAGCAGCGTCAACGGCAGGCTGGGAAGATGCAAGCTAGTGGTTGGGAACCACAATGGTTTGCTAAGGATAAATCAAGCGGTACCTACCGCTACGTAGGAGGATATTGGGAGGCCCGACAACAAAGGAATTGGAACTCTTGTCCTAATATTTTTGGTCAAATTCCGTCTGATCATCTTTTAGACCAAGGTTAA	2316	0.4421	MPPLPSSILAKSELFSRPASHIVNHSISSGGSQRHDQQQLVVVPTAVDVRINDLVGNGISGILQKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIVINPETEKGFKVIGDESMRIISRNRNSHYSQHWRKPFGEIHLQVSTIRESRSDDKRFSIFTGTKTLHLRAETREDRVAWVEALYAVKDMFPRMSNCELMAPVDNSAISTEKLRHRLMEEGVSEAAIQDSEQIMRNEYAALQSQLLLLKQKQLALIDNLRQLETEKVDLENTVVDESQRQRQGNGQEASSILGQEKFSASVCGSEDDNDRNDAAEEGTDDDDDAAFFDTRDFLSSSSSFKSNGSDFRASSFSSDDEGVPTVGFEEDVDPCIKTVGTNYPRVKRRKKLPEPVEKEKGVSLWSLIKDNIGKDLTKVCLPVYFNEPLSSLQKCCEEMEYSYLLDRAYEWGRRGNTLMRILNVAAFAVSAYASTDGKICKPFNPLLGETYEADFPDKGFRFISEKVSHHPTIVACHCEGTGWKFWADSNLKSKFWGRSIQLDPVGILTLEFDDGEVFQWSKVTTSIYNLILGKLYCDHYGTMRIQGNGAYSCKLKFKEQSIIDRNPRQVQGIVQDRNGKTLATLIGKWDDSMYYVNGDYGGKGKGYESLSEAHLLWKRSKPPKFPTRYNLTRFAITLNELTPGLKEKLPPTDSRLRPDQRYLENGEYEMANSEKLRLEQRQRQAGKMQASGWEPQWFAKDKSSGTYRYVGGYWEARQQRNWNSCPNIFGQIPSDHLLDQG	771

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi7g01072	771	Gene3D	-	690	755	-	-
	Vivi7g01072	771	MobiDBLite	consensus disorder prediction	304	321	-	-
	Vivi7g01072	771	CDD	PH_ORP_plant	59	192	-	-
	Vivi7g01072	771	Pfam	Pleckstrin homology domain	65	179	-	-
	Vivi7g01072	771	MobiDBLite	consensus disorder prediction	270	289	-	-
	Vivi7g01072	771	FunFam	oxysterol-binding protein-related protein 1D isoform X1	479	651	-	-
	Vivi7g01072	771	SUPERFAMILY	PH domain-like	59	184	-	-
	Vivi7g01072	771	SUPERFAMILY	Oxysterol-binding protein-like	388	764	IPR037239	-
	Vivi7g01072	771	Gene3D	-	57	186	IPR011993	-
	Vivi7g01072	771	FunFam	Oxysterol-binding protein-related protein 2A	690	761	-	-
	Vivi7g01072	771	Gene3D	-	479	654	-	-
	Vivi7g01072	771	SMART	PH_update	57	186	IPR001849	-
	Vivi7g01072	771	MobiDBLite	consensus disorder prediction	295	352	-	-
	Vivi7g01072	771	ProSiteProfiles	PH domain profile.	56	184	IPR001849	-
	Vivi7g01072	771	Coils	Coil	247	274	-	-
	Vivi7g01072	771	MobiDBLite	consensus disorder prediction	271	289	-	-
	Vivi7g01072	771	MobiDBLite	consensus disorder prediction	325	351	-	-
	Vivi7g01072	771	PANTHER	OXYSTEROL-BINDING PROTEIN-RELATED	58	747	IPR000648	GO:0008289
	Vivi7g01072	771	Pfam	Oxysterol-binding protein	393	747	IPR000648	GO:0008289

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi7g01072	Vivi-Chr7	55854985	55860975	Dispersed/Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi7g01072	K20456		-	gmx:100817212	1260.74

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi7g01072	7	55854985	55860975	Vivi7g01072	7	55854985	55860975	ECH