Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05858 ATGTTTAGATTCTGGGGATCACAAGATCAACAATCGCAGCAGCAGGGTTCATCGCAGTCGTGGTATCCGCCATCTGTGATGAGCTCGTCGAGTTCTTCAAGACCCGCTACACCCGCTTCCTCTTCCGGTTCGCCGAGGCCTTCTTCGCATGTTCCACCAGCTGAAGCCGCCGGGACAATTGCTTCTCTGAAGGACAAGAGTGTTGATGAGTTAAGGAAGCTTTTATCTGATAAAGATGCGTATCAACAGTTTCTTCAATCACTTGAGCAGGTCAAGATTCAATCCAATCTGAAAGATGAACTTAGCAAGGAGAATTTGCAACTTGCAGAGGAAAATCTACAAAAGGAACCTCGTATCATGGAACTTAGGAATCAGTGTAGAATAATTCGCACAACCGAGTTAGCTACTGCCAGTGAGAAACTAAATGAGCTTGAGAAGCAGAAAGAGGAAATGTTAAAGTTGAATTCTCCTGCATCCCTTATCCAAAGGATTCAAGAGTCCGTGAACCAGACAGATGAGGAATCTGAAAACCTGCACCAGCAACTCCTTGACAAAGAGATTGACCTTGCAGCTTTTTTGCAGAAATACAAGAAGCTACGCACCACTTATCACAAGAGAACTCTTGTACATCTTGCTGCTAAAACATCAAATATATGA 657 0.4384 MFRFWGSQDQQSQQQGSSQSWYPPSVMSSSSSSRPATPASSSGSPRPSSHVPPAEAAGTIASLKDKSVDELRKLLSDKDAYQQFLQSLEQVKIQSNLKDELSKENLQLAEENLQKEPRIMELRNQCRIIRTTELATASEKLNELEKQKEEMLKLNSPASLIQRIQESVNQTDEESENLHQQLLDKEIDLAAFLQKYKKLRTTYHKRTLVHLAAKTSNI 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05858 218 MobiDBLite consensus disorder prediction 1 58 - -
Vivi6g05858 218 FunFam Vacuolar protein-sorting-associated protein 37 homolog 1 142 211 - -
Vivi6g05858 218 MobiDBLite consensus disorder prediction 1 48 - -
Vivi6g05858 218 Coils Coil 94 114 - -
Vivi6g05858 218 Pfam Modifier of rudimentary (Mod(r)) protein 64 207 IPR009851 -
Vivi6g05858 218 Coils Coil 134 154 - -
Vivi6g05858 218 SUPERFAMILY Endosomal sorting complex assembly domain 157 206 IPR037202 -
Vivi6g05858 218 Coils Coil 161 181 - -
Vivi6g05858 218 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37 11 216 - -
Vivi6g05858 218 Gene3D Helix hairpin bin 142 212 IPR029012 -
Vivi6g05858 218 ProSiteProfiles VPS37 C-terminal domain profile. 138 218 IPR009851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05858 Vivi-Chr6 166291583 166295787 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05858 K12185 - gmx:100305851 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05858 6 166291583 166295787 Vivi6g05858 6 166291583 166295787 ECH