Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05856 ATGAAACTCTTGGAAAAAGATTTTGCTCTAAACCAAACAGGGACCGTTAAAATAATCGCAGAAGAACCCGACGATGTGTGGCTCCTTTACAACCTCATCACCGTCGGCGACGTCGTCACCGCCGAAACCACCCGCAAAATCCACCTCGAATCAAACAAAAACACCGCAACACGTGTCAAACTCACCCTTCATCTCAAAGTCACAAGCCGCGACTTTCACAAAGACTCTTCCACCCTCCGCGTCCATGGCCGCAACCTTGAACCAAACCAACATGTAGCTGCTGGTTCGTTCCACACTTTAACTCTTGAGATAAACAAGCCCTTTGAACTTAGGAAAAAGATATGGGGTTCAACCGCCGTTGAAGCCTTATCGGATGCCACCGAGAATGAGAATTCTTCGTCTTCTTCTGAGGCCAATCTTGCTGTTGTTGTTCTTCAACAACATCAAGCTGAGATTCACTTGCTTGGAAAAGGGGTCACCACTCGTTGTTCCAAGATTGAACCCTCTTCACATTCACGTAAAAAGTCATCATCTTCTTCCTCTAGCGTGTTTCTTCGTGATGTTTTTTCAGTTTTTGTGAAGCACGTGGATTTCAAAGTTGTGAAAACCGTGGTGATAGCCGGAGATAGAGATAGAGACAGCAATGATAATACATCGATATCTCCAACTATTTTCCGTAGGTTTCTTCTGTCGGAAGCGAGGAGGTTAAGAATGAGGTGGATCGAAGAGAACAAGTCTCGTATTGTTGTTGTAGGATCACGGTGTAATACTAATAACAAGAAAGGTGATTATGACTTTGATTTGAGGGAAGTTTTCAACGACGTAGCAGTGATGAATTTAATAAAGGATAGCAATTTAGGGTTAGAGATTAGGGTTTTTAAGGAACTATGGGACATGGTGTGCAACAATTCGGATCGTGTATGTTATGGACCAAAGCATGTGGAGAGTGCACATGAGATGAAAGCAATTGAAACGCTTTTGATAAGTGATGATCTTTATAGGAATGAAGAGATTGATATGCGGAGGAAATATGTTGGTTTGGTGAAATCAGTGAAAGAGGGTGGTGGGAAGGCTTTGGTGTATTCTTCTATGCATGTTTCGACACCACAGTTGGATCAGTTGACTGGTGTTGCTGCCATACTCAGATTTCCATTGCCTGGTTTCCAAGATATGGATGATGATGATGATCATGTTTAG 1197 0.4286 MKLLEKDFALNQTGTVKIIAEEPDDVWLLYNLITVGDVVTAETTRKIHLESNKNTATRVKLTLHLKVTSRDFHKDSSTLRVHGRNLEPNQHVAAGSFHTLTLEINKPFELRKKIWGSTAVEALSDATENENSSSSSEANLAVVVLQQHQAEIHLLGKGVTTRCSKIEPSSHSRKKSSSSSSSVFLRDVFSVFVKHVDFKVVKTVVIAGDRDRDSNDNTSISPTIFRRFLLSEARRLRMRWIEENKSRIVVVGSRCNTNNKKGDYDFDLREVFNDVAVMNLIKDSNLGLEIRVFKELWDMVCNNSDRVCYGPKHVESAHEMKAIETLLISDDLYRNEEIDMRRKYVGLVKSVKEGGGKALVYSSMHVSTPQLDQLTGVAAILRFPLPGFQDMDDDDDHV 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05856 398 Gene3D Pelota, domain A 1 129 IPR038069 -
Vivi6g05856 398 Gene3D eRF1 domain 2 138 281 IPR042226 -
Vivi6g05856 398 PANTHER PELOTA 1 394 IPR004405 GO:0070481|GO:0070966|GO:0071025
Vivi6g05856 398 Pfam eRF1 domain 3 289 385 IPR005142 -
Vivi6g05856 398 SMART eRF1_1_2 1 128 IPR005140 -
Vivi6g05856 398 FunFam Protein pelota homolog 286 398 - -
Vivi6g05856 398 FunFam Protein pelota homolog 1 129 - -
Vivi6g05856 398 SUPERFAMILY Translational machinery components 136 284 - -
Vivi6g05856 398 Pfam eRF1 domain 1 1 126 IPR005140 -
Vivi6g05856 398 SUPERFAMILY Dom34/Pelota N-terminal domain-like 1 127 IPR038069 -
Vivi6g05856 398 SUPERFAMILY L30e-like 289 388 IPR029064 -
Vivi6g05856 398 Gene3D - 283 398 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05856 Vivi-Chr6 166280933 166282344 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05856 K06965 - gmx:100803618 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05856 6 166280933 166282344 Vivi6g05856 6 166280933 166282344 ECH