Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05847 ATGGATGCACCTCGAAAACACCAGGTATCGTTGCGAGGAGCGAGTGCGAAGGAGATTACGCGAGATGATCTTCTTCAGAAGGTTTCGCGGGAAAGAGAACTTCGTAATTATGCAAAACGTGCTGCTGCTGCTGCTCTCTTCGTTCAGAGAGTATGGAGGCGCTTCAAGGTTACAAAAATGGTTGCTCTTCAGCTTCAGCAGGAGTGGGAGACATCGGTGAATAGTTATACGGGGGTGATGACTGCAAATTGGATTTCAAACAATTTGTTGAGGCCATTTCTGTTCTTTGTGACCCGGTTCTCAAATCGGCATCAAAAGGTTCATAGCAAGAAAACAGACTCTATGAAGATGTGCTTTACAATCTTATTGGAAAGCCTGAATTCTTCTGATTCAAAGCTGAACTATTGCTTTTTGGCAATTGGTACTACTGAAGAGAGAATAATTTGGCGTTACCAGGCACAGCGACTTACTTCTCTTGGTTTTTCGATTCTTTCAGAGTATAGTGAATGCAATTCAGGGGCTCAAGATATTACTATTGTTACATCTCTAGCAATGCGCATTCTTGTAATGTTAACTGATATAAAAGGATGGAAAGGCATTACAGATGACAACTGCTTAGATGCAGACTTAGCCGTGAAAGGTTTAGTTGAGTTCATTGGGAGTAGTAAAAGTTGCAGTTATGTTTCTATTGCCAGATATATTAGAGCATTGGATAAACACTCTTCCCAGATGAAAGTTGTCACCCAGGCCGATGAGAAGTTTTTTATTACTGCCAGTGCAATAACTTTAGCTGTGCGGCCCTTTTCTCTGACAAACTTTGATGGAGAAAGGCCTTGTATGCTGAATGGCAACCATGCTGCTAAGCAGTATATTTTATATCTAATGACTATTCCTTGGCTAGTGCAACATATCCCACCTGTTCTTCTGCCTGCTTTAAAACACAAATCGATTATGTTCACATGTTTTCAGGCACTATTGATTTTGAAAGAGGATGTTTTAATGGAGATGTCAGAGTTGGTAAAGTCAGAAGTTCTTGTCTCTTTCAAGGCTATTCCACCAGTTGGTTGGTCTCTCGCTAACTTTATATGTCTAGCAACAGGGAAGGAAAATAATCATGCAGACTCCGGATCCTTCAATCAAGGTTTAGACTGTGCATTGTATGTCCATGTTATTGTCACTCTAACAGAAAGCCTACTGGCTTGTCTTGATAATATTGAATGGCTCAAAAAGAAGAAATCTCTCCAAACTGATGCTGAAAGTTCAACCCACGAGTCGTTAATAATGTCATACATGGATCAATTTAAGCCTGTCTGTCAGCAATGGCATCTCACAAATCTTTTGGCATCAGTGAATAGATATGCCACCAACAAGGCTGAGACTTCAAAATCAAACAGTCTGGAATATTTGGGGAAGCTAGATCTGTGTGATGTTGCACTTTTTTATTCTAACTTGCTTAGAGTATTTTCAGTCTTGAGTCCAGTTCGGGGATCATTACCAGTTCTTAACATGCTATCATTTACTCCTGGATTTCTTGTGAGATTGTGGGGTGAACTTGAGGATTCCTTTTTCTCTGAACACAAACATATGTCGGATAACCACTCAAGTGAAAATGGAAAGCATAAAGCTTTTGAGAAGATTCCAAAACAGGCAAGTAAAGATGGGGCCAGTAAGTGGGTCAGCGTACTCCATAAATTTACAGGTAAGTCACAAACCGCAACAGACTGCACAGATCCCATTGACAGTCACTCTGCACCGAGCAAAGTGAATTTAGAACCATCAGATGTATGGGACATAAAACCTATGAGGCAGGGCCCACAAGGCATTCCGAAAAATGTGTTTGCTATGCTTCATCTTTTCTGCGCAACCTATTCTCACCTGCTTTTAGTTCTTGATGACATAGAGTTTTATGAGAAACAGGTTCCATTCAAGTTAGAGCAGCAACGAAGAATTGCATCAATGCTTAATACCCTAGTCTATAATGGCTTGTCTCATGTTAATGGTCATCATAGTAGGCCCCTCATGGATTGTGCTGTCAGATGCTTACATTTAATGTATGAAAGAGATTGCAGACATCCATTTTGTCCTCCTGATTTGTGGCTTTCTCCTGCTAGAAAAAGTCGGCCTCCAGTTGCAGTTGCTGCTAGAACTCATGAAATTGTTTTAGCCAACCTAAGATCTGACGATTCATCGTCTTCCCCGAGTCTAGGCTCTGTTATCACTGTGACTCCCCATGTATTCCCATTTGAAGAAAGAGTGGAGATGTTTCGTGAATTCATCAAGATGGATAAAACTTCACGCAAAATGGCTGGTGAAATTTCTGAACCTGGTTCACGAGCCATTGAGATTGTAGTACGTCGGGGTCATATTGTTGAAGATGGATTTCAACAATTAAACTCACTTGGGTCAAAGTTGAAGTCATCCATCCATGTCTCATTTGTCAGTGAATGTGGCCTTATGGAGGCTGGTCTGGACTATGGTGGATTATCAAAGGAGTTCTTGACTGACATATCAAAAGAAGCATTTGCCCCTGAATACGGGCTTTTTTCCCAAACCTCAACTTCAGATAGCCTCCTAATTCCCACTGCTTCCGCAAGATTTTTGGACAATGGTCTTCAGATGATTGAGTTCCTCGGAAGAATAGTTGGTAAAGCTCTTTATGAAGGAATATTACTTGATTACTCTTTCTCGCATGTTTTTGTACAAAAGCTGTTGGGACGATATAGCTTTCTTGATGAATTATCAACACTTGATCCAGAGCTATACAGGAGTCTTATGTATGTCAAGAATTATGATGGTGATGTCAAGGAGCTCTTTTTTGACTTCACAGTTACTGAAGAATCATTTGGTAAAAGGCATGTGGTTGAGCTCAAGTCTGGGGGCAAAGATATTTCTGTGACAAATGAAAACAAGATGCAGTACATACATGCGATGGCAGACTACAAACTCAACCAACAGATATTTCCATTTTCAAATGCATTTTATAGAGGGCTAACAGATCTTATATCTCCATCCTGGTTGAAATTATTCAACGCTAGTGAATTTAATCAGTTGCTTTCAGGTGGCAATTACGATATTGATGTTGAAGACTTTAAAAATAATACACGATACACTGGTGGTTACAGTGAGGGGAGCCGGACAATCAAAATCTTTTGGGAGGTGATTAAAGGCTTTGAACCTAAAGAGCGCTGTATGGTTCTTAAATTTGTCACCAGTTGCTCTCGTGCTCCATTACTAGGGTTCAAATACTTACAGCCACCTTTTACCATCCACAAGGTGGCATGTGATGTCCCTCTTTGGGCAACATTTGGAGGACAAGATGTAGATCGGCTTCCATCAGCTTCAACCTGCTACAACACCCTTAAGCTTCCAACATACAAACGTCCAGGAACTTTGAGAACAAAGCTTTTATATGCTATCAATTCAAATGCCGGATTTGAACTTTCTTGA 3447 0.4059 MDAPRKHQVSLRGASAKEITRDDLLQKVSRERELRNYAKRAAAAALFVQRVWRRFKVTKMVALQLQQEWETSVNSYTGVMTANWISNNLLRPFLFFVTRFSNRHQKVHSKKTDSMKMCFTILLESLNSSDSKLNYCFLAIGTTEERIIWRYQAQRLTSLGFSILSEYSECNSGAQDITIVTSLAMRILVMLTDIKGWKGITDDNCLDADLAVKGLVEFIGSSKSCSYVSIARYIRALDKHSSQMKVVTQADEKFFITASAITLAVRPFSLTNFDGERPCMLNGNHAAKQYILYLMTIPWLVQHIPPVLLPALKHKSIMFTCFQALLILKEDVLMEMSELVKSEVLVSFKAIPPVGWSLANFICLATGKENNHADSGSFNQGLDCALYVHVIVTLTESLLACLDNIEWLKKKKSLQTDAESSTHESLIMSYMDQFKPVCQQWHLTNLLASVNRYATNKAETSKSNSLEYLGKLDLCDVALFYSNLLRVFSVLSPVRGSLPVLNMLSFTPGFLVRLWGELEDSFFSEHKHMSDNHSSENGKHKAFEKIPKQASKDGASKWVSVLHKFTGKSQTATDCTDPIDSHSAPSKVNLEPSDVWDIKPMRQGPQGIPKNVFAMLHLFCATYSHLLLVLDDIEFYEKQVPFKLEQQRRIASMLNTLVYNGLSHVNGHHSRPLMDCAVRCLHLMYERDCRHPFCPPDLWLSPARKSRPPVAVAARTHEIVLANLRSDDSSSSPSLGSVITVTPHVFPFEERVEMFREFIKMDKTSRKMAGEISEPGSRAIEIVVRRGHIVEDGFQQLNSLGSKLKSSIHVSFVSECGLMEAGLDYGGLSKEFLTDISKEAFAPEYGLFSQTSTSDSLLIPTASARFLDNGLQMIEFLGRIVGKALYEGILLDYSFSHVFVQKLLGRYSFLDELSTLDPELYRSLMYVKNYDGDVKELFFDFTVTEESFGKRHVVELKSGGKDISVTNENKMQYIHAMADYKLNQQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGNYDIDVEDFKNNTRYTGGYSEGSRTIKIFWEVIKGFEPKERCMVLKFVTSCSRAPLLGFKYLQPPFTIHKVACDVPLWATFGGQDVDRLPSASTCYNTLKLPTYKRPGTLRTKLLYAINSNAGFELS 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05847 1148 FunFam E3 ubiquitin-protein ligase UPL7 1023 1147 - -
Vivi6g05847 1148 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 6 1148 IPR044611 GO:0000209|GO:0061630
Vivi6g05847 1148 Gene3D Hect, E3 ligase catalytic domain 906 985 - -
Vivi6g05847 1148 SUPERFAMILY Hect, E3 ligase catalytic domain 780 1141 IPR035983 GO:0004842
Vivi6g05847 1148 Gene3D Hect, E3 ligase catalytic domain 1023 1147 - -
Vivi6g05847 1148 CDD HECTc 780 1146 IPR000569 GO:0004842
Vivi6g05847 1148 Gene3D Hect, E3 ligase catalytic domains 782 1020 - -
Vivi6g05847 1148 ProSiteProfiles HECT domain profile. 804 1148 IPR000569 GO:0004842
Vivi6g05847 1148 SMART hect_3 798 1148 IPR000569 GO:0004842
Vivi6g05847 1148 FunFam Putative Ubiquitin-protein ligase E3C 906 985 - -
Vivi6g05847 1148 Pfam HECT-domain (ubiquitin-transferase) 835 1148 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05847 Vivi-Chr6 166185551 166195887 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05847 K10588 - gmx:100527169 1922.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05847 6 166185551 166195887 Vivi6g05847 6 166185551 166195887 ECH