Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05807 ATGGCGGAGCATTTGGCATCGATCTTCGGGACCGAGAAAGACAGAGTGAACTGCCCTTTCTACTTCAAGATCGGAGCTTGTCGACATGGCGACCGCTGTTCTCGCCTTCACACTAAGCCCACCATCAGTCCCACTCTCGTTCTCTCCAACATGTATCAGAGACCTGACATGAATCTCAACTTCATCAACCCTACCCCTAATCAGCCTCAGCAACCGCAACCGCCTCAGCAGCCGCAGCCGGAGTCGCTCGACCCTGATAAGCTTCAAGAACACTTCGATGATTTTTATGAAGATCTGTTTGAGGAGCTTAGCAAGTATGGGCAAATTCAGAGCTTGAATATTTGTGATAATTTGGCTGATCACATGGTTGGTAATGTATATGTTCAGTATAAAGAGGAAGATCATGCTGCTAATGCCCTAATGAATCTCACTGGAAGATTTTACTCAGGTCGACCGATCATTGTTGACTTCTCTCCTGTTACGGATTTTCGAGAAGCTACTTGTAGGCAGTATGAGGAAAATGTATGTAATCGAGGTGGCTACTGCAACTTTATGCATCTAAAGAAAATTAGCAGAGATTTGAGGAAGCGGTTATTTGGAAGAAGTAGTAGGCGGTCATGGAATGACCGTGGTGGAAGCAGAAGCCGGAGCCCGCCAAGAAATCGTAACTATGAGGGGCGTTCATATTCAGGTCGTGGTTCTGGTAGAAGGGACCTTGACAGGCCTCATGGCCACCATGGTAGGAGACCAAGAAGCCGTAGTCCTCGTCATAGAGGAAAAAGAAGTAGAAGTCCAGCTGGCAGGGATAGGAGTCCAAACCCTATCAGAGAAAGAGAAAGTAGTGTAGAAAGGAGAGCTAGAATAGAACAATGGAACAGGGAGAAAGAAGTTGAAGATTCTGGTAACAAGGACAATAAGAGTAGCAATGATTATGAAGAGCCGAGCTTAAGAAATGGCAGTGAGTCTGGTAATCATCAGATAGAGTAA 987 0.459 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLNFINPTPNQPQQPQPPQQPQPESLDPDKLQEHFDDFYEDLFEELSKYGQIQSLNICDNLADHMVGNVYVQYKEEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRDLRKRLFGRSSRRSWNDRGGSRSRSPPRNRNYEGRSYSGRGSGRRDLDRPHGHHGRRPRSRSPRHRGKRSRSPAGRDRSPNPIRERESSVERRARIEQWNREKEVEDSGNKDNKSSNDYEEPSLRNGSESGNHQIE 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05807 328 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Vivi6g05807 328 MobiDBLite consensus disorder prediction 203 328 - -
Vivi6g05807 328 MobiDBLite consensus disorder prediction 58 87 - -
Vivi6g05807 328 ProSiteProfiles Zinc finger C3H1-type profile. 162 189 IPR000571 GO:0046872
Vivi6g05807 328 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 153 IPR000504 GO:0003723
Vivi6g05807 328 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 294 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vivi6g05807 328 MobiDBLite consensus disorder prediction 242 264 - -
Vivi6g05807 328 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 160 IPR000504 GO:0003723
Vivi6g05807 328 FunFam Splicing factor U2AF small subunit 45 159 - -
Vivi6g05807 328 MobiDBLite consensus disorder prediction 312 328 - -
Vivi6g05807 328 MobiDBLite consensus disorder prediction 265 311 - -
Vivi6g05807 328 CDD RRM_U2AF35B 44 159 - -
Vivi6g05807 328 MobiDBLite consensus disorder prediction 212 228 - -
Vivi6g05807 328 Gene3D - 43 159 IPR012677 -
Vivi6g05807 328 SUPERFAMILY RNA-binding domain, RBD 91 163 IPR035979 GO:0003676
Vivi6g05807 328 PRINTS U2 auxiliary factor small subunit signature 117 139 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vivi6g05807 328 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vivi6g05807 328 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vivi6g05807 328 PRINTS U2 auxiliary factor small subunit signature 89 104 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vivi6g05807 328 PRINTS U2 auxiliary factor small subunit signature 144 168 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vivi6g05807 328 PRINTS U2 auxiliary factor small subunit signature 179 191 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vivi6g05807 328 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Vivi6g05807 328 SMART c3hfinal6 162 188 IPR000571 GO:0046872
Vivi6g05807 328 MobiDBLite consensus disorder prediction 67 81 - -
Vivi6g05807 328 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 37 IPR000571 GO:0046872
Vivi6g05807 328 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 164 187 IPR000571 GO:0046872
Vivi6g05807 328 SMART rrm2_1 81 156 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05807 Vivi-Chr6 165333818 165336869 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05807 K12836 - gmx:100811622 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05807 6 165333818 165336869 Vivi6g05807 6 165333818 165336869 ECH