Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05774 ATGGTTTATACAATCTCAGGAATTCGATTTCCCGCTGTTCCTTCTCTGCACAAATCCACCTTACGCGACGATCGCAGAGCTTCATCTCACTCTTTTTTTCTCAAGAAGAACTCGTCATCATTATCTCGGACCTCACTCTATGCAAAGTTTTCACGTGATTCTGAAACCAAATCTTCCACAATTGCTGAATCTGATAAAGTACTTATTCCTGAAGATCAAGATAACTCTGTAACCTTGACAGATCAACTTGAAAATCCTGTTATAACCTCAGAGGATGCACAGAATTCGGAGGATTTAACCATGAAAGGTGGAAATAAATACAATCTTGATGAAGCTGTTAGCAATTATAGAGAGGTTGGAGACGGGAAAGATTCTGTTGTGTCATCATCACTTGTAGATGTTAACACCGACACTCAAACCAAGAAGACATCAATTGATTCAGACAAGAAAGTAAAAGTGGATAAACCTAAGATCATTCCTCCACCCGGTACTGGGCAGAAAATATATGAGATTGATCCACTTTTGCAAGCTCACCGTCAGCATCTTGATTTCCGTTATGGACAATACAAAAGACTTCGGGAGGAAATTGACAAATATGAAGGTGGTCTTGATGCATTTTCGCGTGGGTACGAAAAGTTAGGCTTCATACGCAGTGCTACGGGCATTACTTACAGAGAGTGGGCGCCTGGAGCTAAGTCAGCAGCATTAGTTGGAGATTTCAACAATTGGAATCCAAATGCAGATGTAATGACAAAGGACGCTTTTGGTGTATGGGAGATCTTCTTGCCAAACAATGCCGATGGTTCACCACCAATTCCTCATGGTTCTCGAGTCAAGATCCACATGGATACTCCCTCTGGGATCAAGGACTCAATTCCTGCTTGGATCAAATTCTCTGTTCAGGCTCCTGGTGAAATTCCATATAATGGAATATACTATGATCCCCCAGAGGAGGAAAAATATGTCTTCAAACATCCACAGCCAAAACGACCACAGTCAATTAGAATATATGAGTCACACATTGGAATGAGTAGCCCGGAGCCAAAAATCAACACATATGCTAATTTTAGAGATGATGTACTTCCTCGCATTAAAAAACTTGGCTATAATGCTGTCCAGATTATGGCTATCCAAGAACATTCTTATTACGCTAGTTTTGGGTACCATGTTACTAATTTCTTTGCACCTAGCAGTCGGTTTGGAACTCCAGAAGATCTTAAGTCTCTGATAGACAGAGCCCATGAGCTAGGCTTGCTTGTTCTGATGGATATTGTACATAGCCATGCCTCAAATAATACATTGGATGGCCTGAACATGTTTGATGGAACTGATGGTCATTACTTCCATCCTGGTTCACGGGGTTATCATTGGATGTGGGATTCTCGCCTTTTTAACTATGGAAGCTGGGAAGTACTAAGGTATCTACTTTCAAATGCAAGATGGTGGCTGGATGAATATAAGTTTGATGGGTTTCGATTTGACGGTGTCACATCAATGATGTACACTCATCATGGACTGCAGGTAACTTTTACCGGAAATTACGAGGAGTATTTTGGTTTAGCAACTGATGTTGAGGCTGTGGTTTACATGATGCTTGTTAATGATCTCATTCATGGGCTCTTCCCTGAAGCTGTTTCAATTGGTGAAGACGTAAGTGGAATGCCAACATTCTGTCTTCCAACGCAAGATGGTGGGATTGGCTTTAACTACCGCTTGCATATGGCTGTTGCAGACAAGTGGATTGAGCTTCTTAAGAAACAAGATGAAGAATGGAGAATGGGTGATATAGTCCACACACTGACAAACAGAAGGTGGCTGGAAAATTGTGTGGTTTATGCTGAAAGTCATGACCAGGCCTTGGTTGGTGATAAGACACTAGCATTTTGGTTGATGGACAAGGATATGTATGACTTCATGGCTTTAGACAGGCCATCTACTCCTCTAATAGATCGCGGTATAGCATTACACAAAATGATTAGGCTTATTACTATGAGCCTTGGTGGTGAAGGGTATTTGAATTTTATGGGGAATGAATTCGGCCATCCTGAGTGGATCGATTTTCCAAGAGGTGAGCAACATCTTCCTAATGGAAAAATAGTTCCTGGGAATAACAACAGTTATGATAAATGCAGGCGTAGATTTGACTTGGGCGATGCAGATTATCTAAGATATCGTGGAATGCAAGAATTTGATCGAGCTATGCAGCATCTAGAAGAGAAATATGGTTTCATGACTTCTGAGCACCAATATATTTCACGTAAAAATGAAGGTGACAGAGTTATAATCTTCGAAAGAGACAACCTGGTCTTTGTCTTCAATTTTCACTGGAACAGTTATTCAGATTACAAGGTTGGCTGTTTAAAGCCAGGGAAATATAAGATTGTCTTGGATTCAGATGATACCTTGTTTGGTGGCTTCAATAGGCTCAATCATACTGCTGAGTACTTTACCTCTGAAGGATGGTATGATGACCGACCTCGATCTTTTCTCGTTTATGCGCCTTCTAGAACAGCGGTGGTGTATGCCCTTGTGGATAAAGAGGAATCAGAGCCAATTGAGCTGTCGGTTGGAGTTGAGTCAGAGCCAATTGAGCTGTCAGTTGAAGTTGAATCAGAGCCAATTCAACAGTCAGTTGAAGTTGAATCAGAGACAATTCAACAGTCAGTTGAAGCTGAACCATGA 2682 0.4124 MVYTISGIRFPAVPSLHKSTLRDDRRASSHSFFLKKNSSSLSRTSLYAKFSRDSETKSSTIAESDKVLIPEDQDNSVTLTDQLENPVITSEDAQNSEDLTMKGGNKYNLDEAVSNYREVGDGKDSVVSSSLVDVNTDTQTKKTSIDSDKKVKVDKPKIIPPPGTGQKIYEIDPLLQAHRQHLDFRYGQYKRLREEIDKYEGGLDAFSRGYEKLGFIRSATGITYREWAPGAKSAALVGDFNNWNPNADVMTKDAFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFKHPQPKRPQSIRIYESHIGMSSPEPKINTYANFRDDVLPRIKKLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFGTPEDLKSLIDRAHELGLLVLMDIVHSHASNNTLDGLNMFDGTDGHYFHPGSRGYHWMWDSRLFNYGSWEVLRYLLSNARWWLDEYKFDGFRFDGVTSMMYTHHGLQVTFTGNYEEYFGLATDVEAVVYMMLVNDLIHGLFPEAVSIGEDVSGMPTFCLPTQDGGIGFNYRLHMAVADKWIELLKKQDEEWRMGDIVHTLTNRRWLENCVVYAESHDQALVGDKTLAFWLMDKDMYDFMALDRPSTPLIDRGIALHKMIRLITMSLGGEGYLNFMGNEFGHPEWIDFPRGEQHLPNGKIVPGNNNSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYISRKNEGDRVIIFERDNLVFVFNFHWNSYSDYKVGCLKPGKYKIVLDSDDTLFGGFNRLNHTAEYFTSEGWYDDRPRSFLVYAPSRTAVVYALVDKEESEPIELSVGVESEPIELSVEVESEPIQQSVEVESETIQQSVEAEP 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05774 893 MobiDBLite consensus disorder prediction 874 893 - -
Vivi6g05774 893 SMART aamy 351 711 IPR006047 GO:0005975
Vivi6g05774 893 SUPERFAMILY (Trans)glycosidases 336 722 IPR017853 -
Vivi6g05774 893 Gene3D Immunoglobulins 208 320 IPR013783 -
Vivi6g05774 893 CDD AmyAc_bac_euk_BE 317 732 - -
Vivi6g05774 893 Pfam Alpha amylase, C-terminal all-beta domain 750 843 IPR006048 GO:0003824|GO:0005975|GO:0043169
Vivi6g05774 893 Pfam Alpha amylase, catalytic domain 361 432 IPR006047 GO:0005975
Vivi6g05774 893 SUPERFAMILY E set domains 206 315 IPR014756 -
Vivi6g05774 893 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 139 845 - -
Vivi6g05774 893 FunFam 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic 746 845 - -
Vivi6g05774 893 FunFam 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic 208 320 - -
Vivi6g05774 893 FunFam 1,4-alpha-glucan branching enzyme 315 741 - -
Vivi6g05774 893 Gene3D - 746 852 IPR013780 -
Vivi6g05774 893 SUPERFAMILY Glycosyl hydrolase domain 746 845 - -
Vivi6g05774 893 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 212 295 IPR004193 GO:0004553|GO:0005975
Vivi6g05774 893 CDD E_set_GBE_euk_N 220 313 - -
Vivi6g05774 893 Gene3D Glycosidases 172 741 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05774 Vivi-Chr6 164386048 164402374 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05774 28 847 Glycoside Hydrolase AT5G03650 74.665 0.0 1292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05774 K00700 - gmx:100785968 1504.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05774 6 164386048 164402374 Vivi6g05774 6 164386048 164402374 ECH