Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05731 ATGAAGAAACATTTTCTAAAATCAATAACAAAACCACCACCACCGATCCTCAACCCACCACAACCACCACCGCAACCAAACCCATCTTTCTTCCCTCCCACACTCTCCCCCACCCAACACTACACCCACTTCCTCCACTTCCTCAACACTCACCTCACCCCTCCCCTCACCCCACAAACCCTAACCCATTTCCTCAAATCAAAGCTCCACCACCACCCTTCTTTCACTCACTACGATTTCCATCTCTTCAATTGGGCTTCATCCCTCGACACATTCTCTCACAATCACACTTCATATGAATGGATGACACAAACCCTCGCTCTCTCTCATCGTTTCTCCCTCCTCCGTACCCTCCTTAACTTCATCTCCTCCAACCCCTGCACCTGCTCCCACGCCATTTTCTCTTGCCCCAAAACTGAATCCATTTTCCGTTTCGCAATTCATGCTTACTGTAAAGCTTCCAAATTCGATGATGCACTTTTTGCATATAATTGTATGCGGAGGTTAATCGATGGAAAACCGAGTGTTTCTATATGTAATATTTTGATTCATGGGTTTGTTAAATCTGGGAGATTTGATAGAGCTTTTGAGTTTTACAATGAGATGGTTAGGGATAGAGTTAAGCCGGATGTTTTTACTTTTAATATTTTGATTAGTGGTTATTGTAGGAATTTTAAGTTTAGTTCTGCATTGGAGATGTTTGATGAAATGCGGAAAATGGGGTGTCATCCAAATGTTGTTACTTTTAATACTTTGATTAAAGGGTTGTTTAGGGAACGTAGAGTTGATGAAGGGATTGGGATGGTTTATGAAATGATTGAATTGGGGTGTCAACTTTCAAATGTCACTTGTGAGATTTTGGTTGATGGGCTTTGTAAGGAAGGTCAGGTTTCGAAGGCGTGTGAGTTGTTAATGGAGTTATCTAAGAGAGAGGTTTTGCCTAAAGGGTATGATTATTTTGTTTTGGTGGAAGTTTTGTGTGGGAATGGAAATGCTTTAAAAGCTTTGGAGGTTATTTATGAGTTGTGGAGTAAAGGTTGTGTTCCTAGCTTGATTTCTTGTATTGTGATGATTGATGGTTTGAGGGGATTAGGAAAGACGGAAGAAGCAAAGAGATTGGTGGAAAAAATGCTTAAAGAGGAGGGCATGGTACTTGATATTGTGACTTTTAATTCTGTTCTTCAAGATCTTTGCGATGCGAGAAGGACCGAAGAGGCCAATAGGTTAAGATTACTTGCTTTGAGCAAGGGTTTGGAACCCGATGGCATGACTTATAAAATTCTGGTTATTGGGTACAGAGGAGAGGGAAATCGAATGGATGGAGAGTTAGTGATAAATGAAATGTTGGATAAGGGGTTTATACCTGATCTTGCTTCATATAATAAGTTAATGGATGGACTATCGAATTGTCAACGACCGGGGCGTTATCATGTGAGCAAAACTGACAGCTGA 1452 0.4105 MKKHFLKSITKPPPPILNPPQPPPQPNPSFFPPTLSPTQHYTHFLHFLNTHLTPPLTPQTLTHFLKSKLHHHPSFTHYDFHLFNWASSLDTFSHNHTSYEWMTQTLALSHRFSLLRTLLNFISSNPCTCSHAIFSCPKTESIFRFAIHAYCKASKFDDALFAYNCMRRLIDGKPSVSICNILIHGFVKSGRFDRAFEFYNEMVRDRVKPDVFTFNILISGYCRNFKFSSALEMFDEMRKMGCHPNVVTFNTLIKGLFRERRVDEGIGMVYEMIELGCQLSNVTCEILVDGLCKEGQVSKACELLMELSKREVLPKGYDYFVLVEVLCGNGNALKALEVIYELWSKGCVPSLISCIVMIDGLRGLGKTEEAKRLVEKMLKEEGMVLDIVTFNSVLQDLCDARRTEEANRLRLLALSKGLEPDGMTYKILVIGYRGEGNRMDGELVINEMLDKGFIPDLASYNKLMDGLSNCQRPGRYHVSKTDS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05731 483 Gene3D Tetratricopeptide repeat domain 363 475 IPR011990 GO:0005515
Vivi6g05731 483 Gene3D Tetratricopeptide repeat domain 77 226 IPR011990 GO:0005515
Vivi6g05731 483 Gene3D Tetratricopeptide repeat domain 227 345 IPR011990 GO:0005515
Vivi6g05731 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Vivi6g05731 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Vivi6g05731 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Vivi6g05731 483 MobiDBLite consensus disorder prediction 1 32 - -
Vivi6g05731 483 Pfam Pentatricopeptide repeat domain 416 465 IPR002885 -
Vivi6g05731 483 MobiDBLite consensus disorder prediction 12 32 - -
Vivi6g05731 483 NCBIfam pentatricopeptide repeat 178 211 IPR002885 -
Vivi6g05731 483 NCBIfam pentatricopeptide repeat 212 246 IPR002885 -
Vivi6g05731 483 NCBIfam pentatricopeptide repeat 353 386 IPR002885 -
Vivi6g05731 483 NCBIfam pentatricopeptide repeat 247 279 IPR002885 -
Vivi6g05731 483 NCBIfam pentatricopeptide repeat 282 314 IPR002885 -
Vivi6g05731 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Vivi6g05731 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Vivi6g05731 483 Pfam PPR repeat family 209 257 IPR002885 -
Vivi6g05731 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Vivi6g05731 483 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 58 335 - -
Vivi6g05731 483 Pfam PPR repeat 276 304 IPR002885 -
Vivi6g05731 483 Pfam PPR repeat 355 380 IPR002885 -
Vivi6g05731 483 Pfam PPR repeat 322 347 IPR002885 -
Vivi6g05731 483 Pfam PPR repeat 178 206 IPR002885 -
Vivi6g05731 483 Pfam PPR repeat 147 168 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05731 Vivi-Chr6 163801191 163807132 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05731 178 480 Miscellaneous Gene Families AT4G11690 27.723 1.59e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05731 - - aprc:113860936 633.254