Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05716 ATGGAAGCAGTTCTAGCATCCCGCCATTTATCCACACCATTCTCTCACAATCGAACCACCAACTCCTCCTCCTCTTCCATCAAACCTCCCTCTTCCATCAAACCTCCCTCTTCCCTTTCTTTCAGAAATTCCTTCGCGAAAGAGATATGGGGTTTGGTTCAGTCGAAGAGCGTAACTTCCAGAAGAACGGACATGATTCGTCCGGTGGTAGTCAGGGCTGAAATGTTTGGACAGTTATCCTCTGGCCTTGAATCTGCCTGGAACAAACTCAAAGGAGAAGAGGTTTTGACTAAAGAGAATATTGTCGAGCCTATGCGAGATATTAGGAGAGCTCTTTTAGAAGCTGATGTTAGTCTTCCTGTTGTAAGAAGGTTTGTGCAATCGGTTACTGATCAAGCTGTGGGAATTGGAGTCACTCGAGGAGTTAAACCCGATCAACAATTGGTTAAGATTGTTCATGATGAACTTGTACAATTGATGGGTGGAGAGGTCTCTGAACTAACTTTTGCCAAATCTGGGCCCACTGTCATTTTATTGGCTGGACTCCAGGGAGTTGGGAAGACTACTGTGTGTGCAAAGTTAGCAACTTATTTCAAGAAACAGGGGAAGAGTTGCATGCTAGTTGCTGGGGATGTTTACAGACCTGCTGCTATTGACCAGCTGACTATTTTGGGCAAGCAGGTGGATGTGCCTGTCTATACAGCAGGTACCGATGGTAAGCCTTCAGTGATTGCTAAACAAGGTTTTGAAGAGGCCAAAAAGAAGAAAATTGACGTGGTTATTGTTGACACTGCTGGTAGGCTGCAGATAGACAAAGCTATGATGGACGAGTTAAAAGAAGTGAAACGGGCACTGAATCCAACAGAAGTCTTGTTAGTTGTGGATGCTATGACAGGGCAAGAAGCAGCAGCTTTGGTGACTACTTTCAATCTTGAGATTGGAATAACTGGTGCCATCTTGACAAAGCTGGATGGTGATTCAAGAGGTGGAGCGGCTTTGAGTGTCAAAGAGGTATCTGGAAAGCCAATTAAGCTGGTAGGACGGGGAGAACGCATGGAAGATCTTGAACCTTTTTATCCCGACCGAATGGCAGGACGCATACTAGGAATGGGTGATGTTCTTTCATTTGTGGAAAAGGCACAAGAAGTTATGCTTCAAGAAGATGCTGAAGACCTGCAAAAGAAGATCATGAGTGCAAAGTTTGACTTTAATGATTTTCTAAAGCAAACTCGTACTGTTGCACAAATGGGTTCTGTGTCTCGAGTCCTTGGGATGATTCCTGGTATGGCAAAGGTTACTCCTACTCAAATTCGAGAAGCAGAGAAGAATTTGCAGAATATGGAAGTGATAATAGAAGCAATGTCCCCTGAGGAAAGAGAAAAGCCAGAACTGTTAGCAGAGTCCCCTGTCAGGAGAAAAAGAGTTGCTCAGGAATCAGGGAAGACAGAGCAGCAGGTAAGCCAACTCGTGGCTCAGCTATTTCAAATGCGTGTTCGGATGAAGAATCTAATGGGTGTAATGGAAGGTGGATCAATGCCAACACTTAGTAATCTTGAGGAAGCACTTAAAACAGAGGAAAAGGTTCCACCTGGCACTGCTAGGAGGAGAAAGAAAGCAAATTCAAGAAGGCTAATTGCAGACTCAGCTTCAAGGCCAAGTCCTCGTGGATTTGGGAGCAAAAACTGA 1686 0.446 MEAVLASRHLSTPFSHNRTTNSSSSSIKPPSSIKPPSSLSFRNSFAKEIWGLVQSKSVTSRRTDMIRPVVVRAEMFGQLSSGLESAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAVGIGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKSGPTVILLAGLQGVGKTTVCAKLATYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDGKPSVIAKQGFEEAKKKKIDVVIVDTAGRLQIDKAMMDELKEVKRALNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMLQEDAEDLQKKIMSAKFDFNDFLKQTRTVAQMGSVSRVLGMIPGMAKVTPTQIREAEKNLQNMEVIIEAMSPEEREKPELLAESPVRRKRVAQESGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSMPTLSNLEEALKTEEKVPPGTARRRKKANSRRLIADSASRPSPRGFGSKN 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05716 561 Gene3D - 78 379 IPR042101 -
Vivi6g05716 561 Hamap Signal recognition particle 54 kDa protein [srp54]. 79 516 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Vivi6g05716 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 427 IPR027417 -
Vivi6g05716 561 SMART SRP54_N_2 75 160 IPR013822 GO:0005525|GO:0006614
Vivi6g05716 561 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 75 517 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Vivi6g05716 561 SMART AAA_5 173 320 IPR003593 GO:0016887
Vivi6g05716 561 MobiDBLite consensus disorder prediction 459 482 - -
Vivi6g05716 561 Pfam SRP54-type protein, helical bundle domain 79 156 IPR013822 GO:0005525|GO:0006614
Vivi6g05716 561 SUPERFAMILY Signal peptide-binding domain 400 501 IPR036891 GO:0006614|GO:0008312|GO:0048500
Vivi6g05716 561 MobiDBLite consensus disorder prediction 10 38 - -
Vivi6g05716 561 Pfam SRP54-type protein, GTPase domain 174 369 IPR000897 GO:0005525|GO:0006614
Vivi6g05716 561 Gene3D - 380 504 IPR036891 GO:0006614|GO:0008312|GO:0048500
Vivi6g05716 561 FunFam Signal recognition particle 54 kDa subunit 164 358 - -
Vivi6g05716 561 Gene3D - 164 358 IPR027417 -
Vivi6g05716 561 MobiDBLite consensus disorder prediction 459 479 - -
Vivi6g05716 561 MobiDBLite consensus disorder prediction 1 38 - -
Vivi6g05716 561 Pfam Signal peptide binding domain 400 498 IPR004125 GO:0006614|GO:0008312|GO:0048500
Vivi6g05716 561 CDD SRP_G 175 367 - -
Vivi6g05716 561 SMART SRP54_3 174 369 IPR000897 GO:0005525|GO:0006614
Vivi6g05716 561 MobiDBLite consensus disorder prediction 522 561 - -
Vivi6g05716 561 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 342 355 IPR000897 GO:0005525|GO:0006614
Vivi6g05716 561 NCBIfam signal recognition particle protein 77 501 IPR004780 GO:0003924|GO:0005525|GO:0006614|GO:0048500
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05716 Vivi-Chr6 163535443 163542174 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05716 K03106 - gmx:100782581 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05716 6 163535443 163542174 Vivi6g05716 6 163535443 163542174 ECH