Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05713 ATGAGCAGGTCAGGCCAGCCACCGGATTTGAAGAAGTACATGGACAAACAGCTTCAAATCAAGCTGAATGCAAATCGCATGATTGTTGGTACTCTCCGGGGCTTTGACCAGTTTATGAATTTGGTTGTTGACAATACTGTGGAGGTGAATGGCAATGAGAAAAATGAGATAGGGATGGTGGTAATCAGAGGAAATAGTGTGGTAACTGTAGAGGCACTTGAACCAGTAAACAGGAGTATCTGA 243 0.4362 MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNEIGMVVIRGNSVVTVEALEPVNRSI 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05713 80 SUPERFAMILY Sm-like ribonucleoproteins 9 76 IPR010920 -
Vivi6g05713 80 CDD Sm_G 6 74 IPR034098 GO:0000387|GO:0005681
Vivi6g05713 80 ProSiteProfiles Sm domain profile. 5 76 IPR047575 GO:0003723
Vivi6g05713 80 Pfam LSM domain 9 71 IPR001163 -
Vivi6g05713 80 FunFam Small nuclear ribonucleoprotein G 1 76 - -
Vivi6g05713 80 SMART Sm3 8 72 IPR001163 -
Vivi6g05713 80 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN 3 79 IPR044641 -
Vivi6g05713 80 Gene3D - 1 76 - -
Vivi6g05713 80 PIRSF Lsm7 5 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05713 Vivi-Chr6 163468498 163470334 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05713 K11099 - egr:104432953 153.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05713 6 163468498 163470334 Vivi6g05713 6 163468498 163470334 ECH