Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05672 ATGGTTATTGCAAATTTTGGACTAAGAGTGCCGAATCAGTATTATCCCCCTTCTAGTGTCATGCACTCAACTCCAAAAGAGGATGCTCAGAAACTTATGGATGAAACTGCTGAAGCTAAATCTTATCAAAATAAAATCATGGCAAGTTCAAGCCCTACAGTTAACAGAAGATTGGAAGGAAAAGTGGCGTTGATAACAGGAGGAGCTAGTGGAATTGGCAAACGAACTGCAGAAATATTCGTCGAACACGGCGCCAAAGTAGTGATCGCAGACATCCAAGATGAACTTGGAGATTCAGTTGTTCAATCTATAGGACCATCAACATGCACGTATGTACATTGCGATGTCACCGACGAGAACCAAATAAAAAATGCTGTGGAAACAACCGTACAGACATACGGGAAACTCGACATCATGTTCAACAACGCTGGCATAGGCGGCCCCAACAACTCTCGGATCATCGACAACGATAAAGCAGATTTCGAACGTGTATTAAGCATCAACGTGACTGGCGTTTTCCTCGGCATCAAGCATGCAGCACAGGCTATGATCCCATCTCGCACAGGTAGCATCATAAGCACTTCTAGCATAAGCTCCTATGTCGGCGGTGCTGCCTCACATGCTTATTGTTGCGCAAAGCATGCTGTGGTTGGTTTAACTAAAAATGCAGCAGTTGAGCTTGGACAATTCGGGATAAGAGTTAATTGCTTGTCTCCTTATGCTTGTGCCACTCCTTTGGCAACACAATTTGTTGGATGTAATGATGGTGAGCTTGAAAGTGCCATGAACTCGTTTGCTAATCTTAAGGGTGTGACCTTTAAAACCGATGATGTCGCAAATGCAGCACTTTATTTTGCTAGTGATGATTCTAGGTATGTGAGTGGCCATAACTTGCTAATAGATGGAGGATTTAGCATTGTTAATCCATCTTTTAAGATGTTTCAGTATTAA 951 0.4269 MVIANFGLRVPNQYYPPSSVMHSTPKEDAQKLMDETAEAKSYQNKIMASSSPTVNRRLEGKVALITGGASGIGKRTAEIFVEHGAKVVIADIQDELGDSVVQSIGPSTCTYVHCDVTDENQIKNAVETTVQTYGKLDIMFNNAGIGGPNNSRIIDNDKADFERVLSINVTGVFLGIKHAAQAMIPSRTGSIISTSSISSYVGGAASHAYCCAKHAVVGLTKNAAVELGQFGIRVNCLSPYACATPLATQFVGCNDGELESAMNSFANLKGVTFKTDDVANAALYFASDDSRYVSGHNLLIDGGFSIVNPSFKMFQY 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05672 316 PRINTS Glucose/ribitol dehydrogenase family signature 183 199 IPR002347 -
Vivi6g05672 316 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
Vivi6g05672 316 PRINTS Glucose/ribitol dehydrogenase family signature 209 228 IPR002347 -
Vivi6g05672 316 PRINTS Glucose/ribitol dehydrogenase family signature 62 79 IPR002347 -
Vivi6g05672 316 PRINTS Glucose/ribitol dehydrogenase family signature 134 145 IPR002347 -
Vivi6g05672 316 PRINTS Glucose/ribitol dehydrogenase family signature 268 288 IPR002347 -
Vivi6g05672 316 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 196 224 IPR020904 GO:0016491
Vivi6g05672 316 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 54 308 - -
Vivi6g05672 316 Gene3D - 47 314 - -
Vivi6g05672 316 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 59 307 IPR036291 -
Vivi6g05672 316 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 189 197 IPR002347 -
Vivi6g05672 316 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 145 IPR002347 -
Vivi6g05672 316 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 209 228 IPR002347 -
Vivi6g05672 316 Pfam Enoyl-(Acyl carrier protein) reductase 67 305 - -
Vivi6g05672 316 FunFam Short-chain dehydrogenase reductase 47 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05672 Vivi-Chr6 163082348 163090693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05672 56 304 Miscellaneous Gene Families AT4G05530 32.669 2.04e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05672 - - gmx:100802915 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05672 6 163082348 163090693 Vivi6g05672 6 163082348 163090693 ECH