Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05654 ATGTCTCACCCTTACATTCTCTTTTCCCTCTCTCTTCTCTCTCTCCTCACATTCTCTTCCTCAAACACCATTTCTCTCCCACTCTCCCCACTATTCACCAAATCCCAATCCTCAGATCTAATCAACTCCCTCAAAACCGCCGCTTCATCTTCCCTAACAAGAGCCCACCACCTCAAAACCCAAAACCCAAATCACAAAAAAACATCCTCCTCCCCAACCAACACACAAATCTACCCCAAAAGCTACGGCGGTTACTCAATAAACCTCAACTTCGGAACACCGCCGCAAACATTATCCTTCATCCTAGACACAGGTAGCAGCCTCGTATGGTTCCCATGTTCCTCCCACTACCTCTGTTCCAACTGCAACTTCCCAAACATCAACCCAACAAAAATCCCATCCTTCATTCCAAGAAACTCATCCACCGCAAAAATCCTCGGTTGCACAAACTCCAAATGCGGTTACATTTTCGGACCAGACACCCAATCTCGTTGCCGAGGTTGCAACCCACAGTCTCAAAACTGTAGCAACATCACCTGTCCAGCTTACATTATCCAATACGGTTTAGGCTCAACCGCTGGTTTCTTACTATTAGATAATCTAGATTTCACCGGAAAAAAAACAGTAGAAAATTTTCTCGTAGGTTGTTCCATTTTATCCACTCGACAACCCTCCGGTATCGCCGGATTCGGTCGAGGACAAGACTCTCTTCCGTCGCAAATGGGACTTAAGAGATTCTCTTACTGCTTACTTTCTCATCAATTCGACGACTCCCCGGAGAATAGTAACCTTGTTTTGCAGGTTTCTTCCACCGGAGATAGAAAAACCAGTAACTTAAGCTACACTCCGTTTCGGAAAAACCCATCAACGAACAACACGGCGTTTCTTGAATACTATTACGTGAATCTTAAAACTGTTGTTATTGGTGGGAAACATGTTAAGATTCCGTTAACAGTTTCGGAACCGGGGATAGATGGTAACGGTGGAACCATCGTTGATTCTGGATCAACTTTTACTTATATGGAAAAGGAAGTTTTCGATTTGGTTTCGAAGGAGTTTGAGAAGCAGCTTTCGAATTATAGTAGAGCGAAAGAGGTTGAAGCTGAATCGGGGTTGAGTTTATGTTTTAACTTCACCGACGTGAAAACGGTGAAATTCCCGGAGTTTGTGTTTCAGTTTAAAGGGGGTGCGAAAATGAAGTTACCGATTGAGAATTATTTTTCTTTGGCGGGTGAAGGTGACGTGGCGTGTTTGACTGTTATGAGTGATGGTGTTGCTGCGCCGGAGAGAAACGGTGGTCCGGCGATTATTTTGGGGAATTATCAGCAGCAGAATTTTAATGTTGAGTTTGATTTGGAAAATGATAGGTTTGGATTTGGACCTCAGAGTTGTCAAAAAAGTGCTTAA 1407 0.4371 MSHPYILFSLSLLSLLTFSSSNTISLPLSPLFTKSQSSDLINSLKTAASSSLTRAHHLKTQNPNHKKTSSSPTNTQIYPKSYGGYSINLNFGTPPQTLSFILDTGSSLVWFPCSSHYLCSNCNFPNINPTKIPSFIPRNSSTAKILGCTNSKCGYIFGPDTQSRCRGCNPQSQNCSNITCPAYIIQYGLGSTAGFLLLDNLDFTGKKTVENFLVGCSILSTRQPSGIAGFGRGQDSLPSQMGLKRFSYCLLSHQFDDSPENSNLVLQVSSTGDRKTSNLSYTPFRKNPSTNNTAFLEYYYVNLKTVVIGGKHVKIPLTVSEPGIDGNGGTIVDSGSTFTYMEKEVFDLVSKEFEKQLSNYSRAKEVEAESGLSLCFNFTDVKTVKFPEFVFQFKGGAKMKLPIENYFSLAGEGDVACLTVMSDGVAAPERNGGPAIILGNYQQQNFNVEFDLENDRFGFGPQSCQKSA 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05654 468 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 100 111 IPR001969 GO:0004190|GO:0006508
Vivi6g05654 468 SUPERFAMILY Acid proteases 80 464 IPR021109 -
Vivi6g05654 468 Gene3D Acid Proteases 78 265 IPR021109 -
Vivi6g05654 468 PANTHER OS07G0603500 PROTEIN-RELATED 27 465 - -
Vivi6g05654 468 FunFam Aspartyl protease family protein 270 467 - -
Vivi6g05654 468 MobiDBLite consensus disorder prediction 55 74 - -
Vivi6g05654 468 Gene3D Acid Proteases 266 468 IPR021109 -
Vivi6g05654 468 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Vivi6g05654 468 PRINTS Pepsin (A1) aspartic protease family signature 330 341 IPR001461 GO:0004190|GO:0006508
Vivi6g05654 468 CDD pepsin_A_like_plant 84 464 IPR034161 -
Vivi6g05654 468 FunFam Aspartic proteinase nepenthesin-2 55 264 - -
Vivi6g05654 468 Pfam Xylanase inhibitor C-terminal 299 460 IPR032799 -
Vivi6g05654 468 ProSiteProfiles Peptidase family A1 domain profile. 85 460 IPR033121 -
Vivi6g05654 468 Pfam Xylanase inhibitor N-terminal 85 261 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05654 Vivi-Chr6 162816643 162818390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05654 57 466 Miscellaneous Gene Families AT1G77480 23.288 2.33e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05654 - - psat:127125583 876.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05654 6 162816643 162818390 Vivi6g05654 6 162816643 162818390 ECH