Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05625 ATGGATCCGGCGATGACGCCGTTGGGGAAAATGCTATTGGAGGAAATAACTCCGGTAGTGATGGTCATCTCAACTCCGGCCGTCGAAGAGACTTGCTTGAAAAACGGCCTCTCGTTTCTCCAGATGCTCACTCCGTTTTGCTTCTTCAACAACATCGACGTGCCAGTGAGGACCGCGAGTGATCAGCCTTATCGTATTCATAAGTTCAAGTTGCGTCTCTTCTATGGTTCTGATGTTAAGAAGCCTAATTTGAAGGTAGCTGAACAGCAATTGAAGCAAGTTATTACAGACTCGGGGGAGAAAGTGTTTTCGGAGTTGTGCTTAGATGTTCCCGGGTTCAATCATGAAGTAACGAGCTCTGAAGACAGAGATACACCATCCTGGTTTCAGTTTTTCAATAAAGAGCTTGTCCGCATGGCTTCCTTTTCAGACCACGAAGCTTTTGACCATCCCGTGGCTTGTCTTTTAGCTGTTTCTTCAAAAGATGAACATCCAATTAGCCGTTTTGTTGACCTTTTTAATACCAACAAGCTTCCTTCCCTTCTAAAAGATGGTGCAATGGATCCAAAGATTTTAAAGCATTACTTGTTAGTGCACGACAATCAAGATGGGCCTGCAGACAGAGCAAGTAAAATATTGACAGAAATGAGGAATACGTTTGGTACAAGTGATTCTTTGCTGCTTTCTATTAATTCTTCCTCTGATGTTCCAATCAAGCATCAAGATAATCCTTGGGCTTCGCAAATATATGATGCCTCTCCTAATCAAGATCTTGGTTGCTTTCTTAGCATTGATGATATCAATGAGATCAAAGATTTAATGCAAGATTTATCATCTAAGCACATCATTCCTAACATGGAGCAAAAAATCCGTTTGCTCAATCAACAGGTTTCTGCAACACGTAAAGGTTTTAAAAACCAAATAAAAAATTTATGGTGGAGAAAAGGGAAAGAAGACGGTGTAGATTCTCCCAATGGTCCTACGTATAACTTTAACTCAATTGAATCCCAGATTCGAGTTTTGGGTGACTATGCTTTCATGTTACGAGATTATGAACTTGCCTTGTCAAATTATCGCCTAATTTCGACAGATTACAAAATTGATAAAGCCTGGAAGCGTTATGCTGGTGTGCAGGAAATGATGGGACTTACGTACTTCATGTTGGATCAATCAAGAAAAGAAGCCGAATATTGCATGGAAAATGCTTTTAACACATATTTAAAACTTGGATTATTGGGTCAGCAAAATGCTACACGATGTGGTCTGTGGTGGATAGAAATGTTAAAAGCACGAGACCTATATAAGGAAGCAGCTACAGTTTACTTTCGTATTTGTGGTGAGGATATCCTACATTCTGCTGTAATGCTTGAACAAGCATCATACTGTTATTTGTTGTCTAAACCCTCCATGTCACGTAAATATGGATTTCATCTAGTTCTTTCTGGTGAGCAGTATAAAAAGTGTGATCAGATCAAACACGCAATTCGAACATACAGAAGCGCTCTTTCTGTTTTTAGAGGAACTACTTGGAGTTATATCAATGATCATGTTCATTTCCATATAGGCCAGTGGTATGCTGCTCTTGGTATGTATGATGTAGCTTGCAAGCATATGATGGAAATCTTGGCTTGCAGTCACCAATCCAAGACGACACAAGAGTTATTCCTGAGTGACTTTCTTCAAGTTGTGGAGAAAACAGGGCGGACATTTGAGGTAACAAAACTTCAATTGCCTGTGATCAACATCTCTTCACTCAAGGTCATATTTGAAGATCACCGAACTTTTGGATCATCCTCAGCTGCTATTAACACTAAAGAAGCCTTATGGCATTCTCTGGAAGAAGACATGATACCATCATTTACAGCTGCCAAAACCAATTGGTTGGAGTTGCAATCAAAGCTTATCTCAAAAAAGCACACTCTATCAAATGTTTGTGTTGCTGGAGAAGCCGTGAAGGTTAATATTGAATTCATAAACCCTCTGCAAATCACAATTCCTGTATCTGGTGTTACACTTATATGCAAATATTCTACTAATACTGATGAACTTACATCAGATGAAAAGGAATTAAGTGTGAAGACTAATAATGAAGTTGACCACTTCAGGGATATGAGCTTATACAACTCCTCCTTTTTGGTATCTGAGGTTGATTTCTCACTAGGAGGTGGTGAAACGACCATGGTTCAACTATCAGTTACTCCCAAGGAAGTAGGTACTCTTGAAATACTTGGTGTTCGATGGAAACTATCAGGTACAATAGTTGGCTTTCACAACTTTGAGTTGAGCCACCCGAAGAAGAATATTGTAAAAGGAAGAAGGAAAGCAAAACAGCCACCTAATGAGAAATTTAAATTTATGGTGATCAAGAGCATACCCAAGATTCAGGGTTCTGTTAACTCTTTACCTGGAAAGGCATATGCTGGAGATTTGCGGCAACTTATGCTGGAGTTGAAGAATCCATCAGAGTTTCCTGTTAAGAATCTGAAGATGAAGATAAGTCACCCTAGATTCCTGATTATTGGGAATCAGGAAAATGTGAAACTAGAGTTTCCTGGTTGCTTAACAAAAACGATAGATTCAGTGCAAAGTGGTGCACATGCTAATCCTAACATGTCTGAAACAATATTTTCGTTTCCGGTGGATACTTCAATTCAAGGGGAAACACCCTTATCTTGGCCTCTTTGGTTTAGGGCTGCTGTTCCTGGTGATATTTCTCTTTATATAAGCATTTATTATGAGATTGAAGATATATCAAGTGTCATTAGATATCGTACTCTTCGCTTGCATTACAATGTGCAGGTATTACCATCATTAGATGTCTCATTTCAAATTAGTCCTTCTCGATTAAGAATCCAAGATTTTCTTGTTCAATTGGATGTTGTGAACAAGACGAGCTCTGAAAGTTTCCAAGTTTATCAGTTGTCATGTATTGGGCAACACTGGGAAATATCATTACTTCAACCTCCTGATACTATTTTCCCTTCTCAAACGTTGATGGCTGGTCAGGCCATATCCTGTTTCTTCACATTGAAGAACTCAAGGAGATTATCAACACTGGAATACAACATATCTACCATGCCTGTCGGAGGTGATGTGTTATTGGTTCCTCAATGCAGTCAGGATTTAGTTTACAATTCAAACAATGTACCTTTGGTCAATTTCCACCATTATGAAAGATTGCAGCAGAAAGTGTTACATGAGGATCTGGGCGACTTAAATACCGTTGATTTTGTGTTGATATCTCGGCCTCTCAGCAATAGTACCAGTCCTGGTTTATCTGACCCTCCTCATGTTATGTCTCACCATGCGTGTCACTTAAGTACTGCTAGCACAGGCCCCATTTCATGGCTAGTGGACGGACCTCAGACCTTGCATCATGACTTTTCTGCATCCTTCTGTGAAATAAATCTAAAGATGCATCTTTACAATTCATCTGGCACCACTGCTTTTGTGCACATTGACACTGTAGATTTTGATCGTAGTGGTGGACATATCAACAGTGGGAATGCTGCTCCATCAGCAACTCCTGATAACCAAGTAGGGTGGCATGATGTCACACCCGTGAATGAACTAAAAGTATTGCCCAATGCTGCCGAAACACAACCAGGAAAGGCACTATCGTTGGAAAGTGTCTCCCCATACATTTGGTCTGGATCAAGCTCAACCAATATCCACCTTGAGTCAATGTCCTCGGCAGAAGTTCCTCTTCAGATCTGTGTTTTCTCTCCAGGGACATACGACCTGTCAAATTATTTTTTGAATTGGAAACTTCCATCCAAGGGTCAGGGAGACAGTGATGATACAAGGCAGCGTTCGGGCAAGTGCCAGGGCTATAAATACTATTTGACTGTGCTCCAGTCCCCTTGA 3867 0.4026 MDPAMTPLGKMLLEEITPVVMVISTPAVEETCLKNGLSFLQMLTPFCFFNNIDVPVRTASDQPYRIHKFKLRLFYGSDVKKPNLKVAEQQLKQVITDSGEKVFSELCLDVPGFNHEVTSSEDRDTPSWFQFFNKELVRMASFSDHEAFDHPVACLLAVSSKDEHPISRFVDLFNTNKLPSLLKDGAMDPKILKHYLLVHDNQDGPADRASKILTEMRNTFGTSDSLLLSINSSSDVPIKHQDNPWASQIYDASPNQDLGCFLSIDDINEIKDLMQDLSSKHIIPNMEQKIRLLNQQVSATRKGFKNQIKNLWWRKGKEDGVDSPNGPTYNFNSIESQIRVLGDYAFMLRDYELALSNYRLISTDYKIDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFNTYLKLGLLGQQNATRCGLWWIEMLKARDLYKEAATVYFRICGEDILHSAVMLEQASYCYLLSKPSMSRKYGFHLVLSGEQYKKCDQIKHAIRTYRSALSVFRGTTWSYINDHVHFHIGQWYAALGMYDVACKHMMEILACSHQSKTTQELFLSDFLQVVEKTGRTFEVTKLQLPVINISSLKVIFEDHRTFGSSSAAINTKEALWHSLEEDMIPSFTAAKTNWLELQSKLISKKHTLSNVCVAGEAVKVNIEFINPLQITIPVSGVTLICKYSTNTDELTSDEKELSVKTNNEVDHFRDMSLYNSSFLVSEVDFSLGGGETTMVQLSVTPKEVGTLEILGVRWKLSGTIVGFHNFELSHPKKNIVKGRRKAKQPPNEKFKFMVIKSIPKIQGSVNSLPGKAYAGDLRQLMLELKNPSEFPVKNLKMKISHPRFLIIGNQENVKLEFPGCLTKTIDSVQSGAHANPNMSETIFSFPVDTSIQGETPLSWPLWFRAAVPGDISLYISIYYEIEDISSVIRYRTLRLHYNVQVLPSLDVSFQISPSRLRIQDFLVQLDVVNKTSSESFQVYQLSCIGQHWEISLLQPPDTIFPSQTLMAGQAISCFFTLKNSRRLSTLEYNISTMPVGGDVLLVPQCSQDLVYNSNNVPLVNFHHYERLQQKVLHEDLGDLNTVDFVLISRPLSNSTSPGLSDPPHVMSHHACHLSTASTGPISWLVDGPQTLHHDFSASFCEINLKMHLYNSSGTTAFVHIDTVDFDRSGGHINSGNAAPSATPDNQVGWHDVTPVNELKVLPNAAETQPGKALSLESVSPYIWSGSSSTNIHLESMSSAEVPLQICVFSPGTYDLSNYFLNWKLPSKGQGDSDDTRQRSGKCQGYKYYLTVLQSP 1288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05625 1288 Pfam ER-Golgi trafficking TRAPP I complex 85 kDa subunit 187 518 IPR024420 -
Vivi6g05625 1288 Gene3D Tetratricopeptide repeat domain 328 553 IPR011990 GO:0005515
Vivi6g05625 1288 Pfam Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit 640 830 IPR013935 -
Vivi6g05625 1288 PANTHER TRANSPORT PROTEIN TRAPP 4 1287 IPR024420 -
Vivi6g05625 1288 SUPERFAMILY TPR-like 428 550 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05625 K20305 - gmx:100809666 2149.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05625 6 162231380 162247509 Vivi6g05625 6 162231380 162247509 ECH