Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05591 ATGACCCGATTGACGGAGAAGCTCCGTTTTTCTTCATTGTTCCTCAAACCGACCCGCTTTCTCTCTCTTCTTTCTCTCTCTACTCTCCGTCTCTGCAAGTCCCTTGCTCGTTTCCTACTCTCCCAAACCCTACCCTTCTTCTCCATGGATAATCTCTTCTCCGATAACGTCGTCGATTACCTCTCCGATGAACTCGATTCCTCTGCTTACTCTCTCCGCCCTAATCGGCGCTTGCTTCAAGAAGATGACCGCGATTTCGCCGACGAGAGGGTTTACTTGCTTCCCTATAGGTGGTGGATTGATGCAGAAGTTGAAGCTGATCGTGTAGAAGGTGTTCTGTATACTGTTTATTCGAATTATGATTCTGAGTCAGAGATTCTGCTCCATCTGAAGAAGGAAGAGGATCGGGAGAAGATTAAGAATTTGGAGGTGGGGTTTTCGGGCCGTCATTATGCTTTGGTTCCTGAAGGAGTTTGGTTGCGTGCTCTCAAACGGTATAATGATTTTAATAATGCAGTGAAAGATTTTGGGAGACTATTCTATGCAGAGGATTGTTTGCCAGATTTGTTCCCCCTCCAACTTAGGATATTTGTTTCATGGGAAACCAGTTCCCTGGTAGCAAAGATAAGCCAAAAGGAAAATGTGCCAGACTTCTACAAGAAAGCTTGTGACATTTTCAATTCTGCTTATAACTCATTGTATATTTGGGACTTCTCTGGGCAGACAACCCAGCTTTTAATAAATGACAAAGCTAGAGTGTCAAATGATTCTCCTGGTCAACCTGGAAAAGAGGTTCTTCTGGAACTACAAGTTCACGGACTTTCTGACTCAATAAGCAGTAGTCATAGCAATGGGACTATTTCAGACAGGTCTCAGATGGAATGTTCTTCTAACAGTGGCCCTGTTATAATGAATGGAAGCACTGACAATGTTATCCCCTACGTTACAGCAAACAACTATTTTCCTGGAAGTAGCTATAGAACAGTCCAACATTTGGGCTTGACAGGATTACAGAATCTTGGAAATACCTGTTTCATGAATAGTGCCATTCAGTGTTTGGCTCACACCCCAGAGCTTGTTGATTATTTCCTTGGAGATTATCGCAGAGAGATAAATTATGAAAATCCACTGGGAATGAATGGAGAACTTGCTTTAGCTTTTGGAGATTTACTTAGAATGCTATGGGTTCCTGGAGCATCACCTGTGGCACCAAGATTGTTCAAGATGAAACTAGCTAACTTTGCTCCTCAGTTTAGTGGTTATATGCAGCATGATTCTCAAGAACTGCTTGCTTTTTTGTTGGATGGACTGCATGAAGACCTTAATCGTGTAAAACGCAAGCCATATCATGAAGTTAAGGATGCTGATGGCCGTCCAGATGAAGAAGTGGCTGAAGAGTATTGGCGTAATCATCTTGCTCGCAATAATTCCATAGTAGTTGATTTGTGCCAAGGTCAGTTCCGATCGACACTGATTTGCCCTTTTTGCAAGAAGGTTTCTATCACCTTTGACCCTTTTATGTACCTATCTCTGCCATTACCTTCTACAACAAAAAGGACCATGACTGTGACTGTCGTGAGCACTGATGGGATCACATTGCCTTCTTCAATTACTGTAACAGTGCCTGAACATGGAACACTTAAGGATCTGATTGGGGCCTTAACTGCTTCTTGTTCTCTGAGAGAGGATGAAACCCTCTTGGTGGCTGAGATATACAGGAATAAAATTTTCCGGGCATTGGAGGATCCATCTGATTCATTGACTGATATTAGAGATCAAGACAAACTTGTCGCTTACCGAGTGCAGAAGTGTAGTGAAGATAGCCTCTTGATCGTTTTCATGCATGAACGTTTGGTGGAAAGTTACGTGAGGGGAAAGTTTGAAAATAGATTATTCGGTTTTCCAGTTGTAGCAAGGCTGTCCGGCATTACTTCCGGATATGATGTTCGTAAGGAGTTTCTGAATTTAATCAATCCGTTTCTGGTGCAAAACACTGAGGAAACAATAGATGAATATGACAACGATGATGATGATACTAAAACACTAAATGAAGTTGATGAATCCGGTGAAACTAACAACTCTGAAGTAATAGAAAGTGATGCAGTCTTGAACAGCGGAGCAGAGGATGACATACATTTGTGGACTGACTTTGAATTCTACTTAATATCATCTGGGAGCGGAAATGAGGTTTATAAGATAACATCGAATGAACCATTACCTGTCACAATGTTGTCCAGTAAGCTGGAGGTAGCTGTTGTATGGTCAGATAAAATGCTTAAAAAGTATGACAGGTATCTGCTTGATTCATTGCCTGAGGTTTTCAAGTCCCAATCTTTCTCCAAGAGAACACAAGAGTCAATATCTATATACAAGTGCCTTGAAGCTTTTTTGAGAGAGGAACCTCTTGGACCAGAAGACATGTGGTACTGTCCTACCTGCAAAAAACCTCAGCAAGCAACTAAAAAGTTGGACCTTTGGAGATTGCCTGAAGTTCTTGTTGTTCATTTGAAGAGGTTCTCATACGACCGATACTTCAAGAACAAGCTAGAAACTTTTGTTGACTTTCCGATTAATGATCTGGATTTGTCAACCTATGTCGCTCACAGGAGCTGTCCATCTCCTTATAGCTATATGTTGTATGCAATTAGTTGTCACTATGGTGGGTTAGGAGGAGGCCATTATACAGCATTTGTTCGTTATGGGCATGATAAATGGTACGAGTTTGATGATAGCAGGGTTGCCCCTGCGGAGGAGGAGACAGTAAAGACTCCTGCTGCTTACGTTCTTTTCTACAAGAAAATTTAG 2805 0.4185 MTRLTEKLRFSSLFLKPTRFLSLLSLSTLRLCKSLARFLLSQTLPFFSMDNLFSDNVVDYLSDELDSSAYSLRPNRRLLQEDDRDFADERVYLLPYRWWIDAEVEADRVEGVLYTVYSNYDSESEILLHLKKEEDREKIKNLEVGFSGRHYALVPEGVWLRALKRYNDFNNAVKDFGRLFYAEDCLPDLFPLQLRIFVSWETSSLVAKISQKENVPDFYKKACDIFNSAYNSLYIWDFSGQTTQLLINDKARVSNDSPGQPGKEVLLELQVHGLSDSISSSHSNGTISDRSQMECSSNSGPVIMNGSTDNVIPYVTANNYFPGSSYRTVQHLGLTGLQNLGNTCFMNSAIQCLAHTPELVDYFLGDYRREINYENPLGMNGELALAFGDLLRMLWVPGASPVAPRLFKMKLANFAPQFSGYMQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDEEVAEEYWRNHLARNNSIVVDLCQGQFRSTLICPFCKKVSITFDPFMYLSLPLPSTTKRTMTVTVVSTDGITLPSSITVTVPEHGTLKDLIGALTASCSLREDETLLVAEIYRNKIFRALEDPSDSLTDIRDQDKLVAYRVQKCSEDSLLIVFMHERLVESYVRGKFENRLFGFPVVARLSGITSGYDVRKEFLNLINPFLVQNTEETIDEYDNDDDDTKTLNEVDESGETNNSEVIESDAVLNSGAEDDIHLWTDFEFYLISSGSGNEVYKITSNEPLPVTMLSSKLEVAVVWSDKMLKKYDRYLLDSLPEVFKSQSFSKRTQESISIYKCLEAFLREEPLGPEDMWYCPTCKKPQQATKKLDLWRLPEVLVVHLKRFSYDRYFKNKLETFVDFPINDLDLSTYVAHRSCPSPYSYMLYAISCHYGGLGGGHYTAFVRYGHDKWYEFDDSRVAPAEEETVKTPAAYVLFYKKI 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05591 934 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 877 894 IPR018200 GO:0004843|GO:0006511
Vivi6g05591 934 Gene3D Cysteine proteinases 324 568 - -
Vivi6g05591 934 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 336 351 IPR018200 GO:0004843|GO:0006511
Vivi6g05591 934 Pfam Ubiquitin carboxyl-terminal hydrolase 335 931 IPR001394 GO:0004843|GO:0016579
Vivi6g05591 934 SUPERFAMILY Cysteine proteinases 333 933 IPR038765 -
Vivi6g05591 934 Gene3D Cysteine proteinases 663 934 - -
Vivi6g05591 934 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 258 933 - -
Vivi6g05591 934 CDD Peptidase_C19R 769 932 - -
Vivi6g05591 934 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 335 934 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05591 Vivi-Chr6 161693338 161700991 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05591 788 934 Miscellaneous Gene Families AT4G31670 34.667 1.14e-16 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05591 - K21343 mtr:25499505 1524.22