Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05574 ATGGATTCAAAATCCATCTATGGTGTCTCCGTCTCCAATTTCATCACCGTCTTCCTCCTCTTCATCCTCCCATTCCATTCTGCATTACCTCATAACTCCACCACCGTTCAGATCAACTCGAACTCCATCCTCGTTGCGCTTCTTGATTCTCATTACACAGAACTCTCTGAACTGGTTGAAAAGGCGCTTCTTCTTCAGAAACTCGAAGAAGCTGTTGGGAAACACAATATAACTATCTTCGCTCCTAGAAATCAAGCGCTAGAACGTGACCTAGATCCTGAATTCAAACGGTTTCTTCTTGAGCCGCGTAATTTGAGGTCACTTCAAACGCTTTTGATGTCTCACATTCTTCCTTCCAGAATCGCTTCACACCACTGGCCAAATACCGATCTCCACCACCATACACTCTCTCACCACCGTCTTCAGTTAACCACAAATCCTTCCGGGAAGCAATCTGTTGATTCCGCTGAGATCCTTAAACCCGACGACGTTATCCGCCCTGACGGTGTTATCCACGGAATCGAACGTCTCATTATCCCTCGCTCCGTACAAGAGGATTTCAACCGGAGAAGAAATTTAGCTGATATATCAGCGATTCTCCCGGAAGGAGCACCGGTGGTAGATCCACGAACTCACAGATTGAAAAAACCGGTTTCCGTCCCAGCCGGAGCTCCACCGGTGCTACCAATCTACGATGCATTGGCTCCTGGACCGTCTCTAGCCCCGGCGCCGGCTCCAGGACCGGGAGGACCACGTCATCACTTTAACGGAGAACGTCAGGTGAAGGATTTCATCCACACACTCTTACATTACGGAGGTTACAATGAAATGGCGGATATTCTCGTTAACCTAACGTCGCTTGCAACGGAAATGGGACGTTTAGTTTCGGAAGGTTACGTTCTCACCGTTTTGGCACCAAACGACGAAGCAATGGCGAAGTTAACCACCGATCAATTGAGTGAACCAGGTGCACCGGAACAAATCATATACTACCATATAATTCCGGAATATCAAACGGAGGAGAGTATGTATAACGCCGTTAGAAGATTCGGTAAAGTTAGTTACGATACACTCCGTTTGCCTCATAAGGTTGTTGCTCAGGAATCTGACGGTTCCGTTAAATTCGGTCACGGTGATACTTCCGCTTATCTCTTTGATCCTGATATTTTCACCGACGGGAGAATCTCCGTTCAGGGAATTGACGGTGTACTTTTACCTCCGGAGGAAGAAAAGGAAGATGAATCACCAATTCGCCGTGCAAAAACTCCACTTGTTAAAGTTGCTGCTAAACCAAAGAGAGGGAAATTGCTGGAACTCGCTTGTAGCATGGTTGGATCTTTTGGAAGAGTCTGCTCATGA 1359 0.4702 MDSKSIYGVSVSNFITVFLLFILPFHSALPHNSTTVQINSNSILVALLDSHYTELSELVEKALLLQKLEEAVGKHNITIFAPRNQALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPSRIASHHWPNTDLHHHTLSHHRLQLTTNPSGKQSVDSAEILKPDDVIRPDGVIHGIERLIIPRSVQEDFNRRRNLADISAILPEGAPVVDPRTHRLKKPVSVPAGAPPVLPIYDALAPGPSLAPAPAPGPGGPRHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNAVRRFGKVSYDTLRLPHKVVAQESDGSVKFGHGDTSAYLFDPDIFTDGRISVQGIDGVLLPPEEEKEDESPIRRAKTPLVKVAAKPKRGKLLELACSMVGSFGRVCS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05574 452 SMART fasc_3 78 181 IPR000782 -
Vivi6g05574 452 SMART fasc_3 302 407 IPR000782 -
Vivi6g05574 452 Gene3D FAS1 domain 280 407 IPR036378 -
Vivi6g05574 452 ProSiteProfiles FAS1/BIgH3 domain profile. 39 178 IPR000782 -
Vivi6g05574 452 Pfam Fasciclin domain 296 406 IPR000782 -
Vivi6g05574 452 Pfam Fasciclin domain 51 180 IPR000782 -
Vivi6g05574 452 ProSiteProfiles FAS1/BIgH3 domain profile. 261 404 IPR000782 -
Vivi6g05574 452 SUPERFAMILY FAS1 domain 36 181 IPR036378 -
Vivi6g05574 452 SUPERFAMILY FAS1 domain 240 408 IPR036378 -
Vivi6g05574 452 Gene3D FAS1 domain 43 180 IPR036378 -
Vivi6g05574 452 FunFam Fasciclin-like arabinogalactan protein 16 256 407 - -
Vivi6g05574 452 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 11 451 IPR044654 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05574 Vivi-Chr6 161496252 161499132 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05574 - - gmx:100818575 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05574 6 161496252 161499132 Vivi6g05574 6 161496252 161499132 ECH