Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05567 ATGGATTCAGGATGGTGGAGGTCTTACTCAAAAACCAATTCGCGATTCCCTTTCCAAGAACGCTTCCTTCATTGCAAGAATTCATCGCAGGATCACGACAACTTGGATAGGTTTATTCCGAATAGATCAGCAATGGATTTTGATTACGCTCACTACATGTTGACGGAGGGTAGAAAGGGAAAAGAAAATCCAGAGGTCATTACACCATACCAGAAAAAACTCGCAGAAGCCGTTAACATCAATGACAAAACTCGAATCTTGGCTTTCAAGAATAAGCCTCCGACACAGTTTGAACTCATGCCTAGGGAAATTCTTTCACCTCCTCCTCAATCCAAATCATCCAAACCCAAACGATGTATTCCTCAGACTTCTGAGAGGACCTTGGATGCTCCTGATATCTTGGACGATTTTTACTTGAATTTACTAGATTGGGGTGGCGATAATGTCCTTAGTATCGCCCTTGAAAATACAGTTTATCTTTGGAATGCTTCGGATAGTTCCACTTCAGAACTTGTCACTGTGGATGATGAATATGGTCCTGTCACAAGTGTTAGTTGGGCCCCAGATGGACATCATTTAGCTATTGGTTTGAACAATTCTCATGTCCAGATATGGGACACCACTGCTTCTAAACAGCTAAGGACTTTGAAGGGTGGACATAGAACAAGAGTGGGTTCACTGGCTTGGAACAGTCACATTCTGACAACAGGAGGAATGGATGGTAAAATAGTAAACAATGATGTTAGAGTGAGATCTCACATTGTTGAAACGTACAGAGGACACAACCAGGAAGTTTGTGGGCTCAAGTGGTCATCCTCAGGACATCAATTGGCGAGTGGTGGTAACGATAATGTTGTTCACATATGGGATAGGTCTGTGGCTTCCTCAAATTCACCTACTAATTGGCTTCATAGGTTTGAGGAACACACAGCTGCCGTGAAGGCACTAGCTTGGTGTCCTTTTCAGGGTAACCTATTGGCATCTGGTGGAGGTGGGGGTGATCATTGCATTAAACTGTGGAACACACACACAGGTGCGAGACTGAATTCTTTCGACACAGGATCACAAGTTTGTTCTCTGCTCTGGAACAAGAATGAGCGCGAGCTTCTTAGCTCACATGGGTTCACTAAAAACCAGCTCACCCTTTGGAAGTATCCTTCAATGGAGAAGATGGCGGAGCTCAGCGGTCACACCTCGAGAGTGTTGTACATGACACAGAGCCCGGATGGCTGTACTGTGGCATCTGCAGCCGCAGATGAGACTCTCAGGTTCTGGAATGTCTTTGGTAACCCAGCAACAGCAGGAAAAGCTGCGCCAAAGGCATATAATGAGCCGTTTGCAAAATTCAACCGTATCCGGTAA 1362 0.4493 MDSGWWRSYSKTNSRFPFQERFLHCKNSSQDHDNLDRFIPNRSAMDFDYAHYMLTEGRKGKENPEVITPYQKKLAEAVNINDKTRILAFKNKPPTQFELMPREILSPPPQSKSSKPKRCIPQTSERTLDAPDILDDFYLNLLDWGGDNVLSIALENTVYLWNASDSSTSELVTVDDEYGPVTSVSWAPDGHHLAIGLNNSHVQIWDTTASKQLRTLKGGHRTRVGSLAWNSHILTTGGMDGKIVNNDVRVRSHIVETYRGHNQEVCGLKWSSSGHQLASGGNDNVVHIWDRSVASSNSPTNWLHRFEEHTAAVKALAWCPFQGNLLASGGGGGDHCIKLWNTHTGARLNSFDTGSQVCSLLWNKNERELLSSHGFTKNQLTLWKYPSMEKMAELSGHTSRVLYMTQSPDGCTVASAAADETLRFWNVFGNPATAGKAAPKAYNEPFAKFNRIR 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05567 453 SMART WD40_4 209 247 IPR001680 GO:0005515
Vivi6g05567 453 SMART WD40_4 344 384 IPR001680 GO:0005515
Vivi6g05567 453 SMART WD40_4 167 206 IPR001680 GO:0005515
Vivi6g05567 453 SMART WD40_4 299 341 IPR001680 GO:0005515
Vivi6g05567 453 SMART WD40_4 251 290 IPR001680 GO:0005515
Vivi6g05567 453 SMART WD40_4 387 426 IPR001680 GO:0005515
Vivi6g05567 453 MobiDBLite consensus disorder prediction 102 124 - -
Vivi6g05567 453 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 258 290 - -
Vivi6g05567 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 427 IPR001680 GO:0005515
Vivi6g05567 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 174 215 IPR001680 GO:0005515
Vivi6g05567 453 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 394 427 - -
Vivi6g05567 453 Pfam WD domain, G-beta repeat 303 341 IPR001680 GO:0005515
Vivi6g05567 453 Pfam WD domain, G-beta repeat 255 290 IPR001680 GO:0005515
Vivi6g05567 453 Pfam WD domain, G-beta repeat 390 426 IPR001680 GO:0005515
Vivi6g05567 453 Gene3D - 83 429 IPR015943 GO:0005515
Vivi6g05567 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 290 IPR001680 GO:0005515
Vivi6g05567 453 ProSitePatterns Trp-Asp (WD) repeats signature. 413 427 IPR019775 -
Vivi6g05567 453 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 174 206 - -
Vivi6g05567 453 Pfam Anaphase-promoting complex subunit 4 WD40 domain 173 231 IPR024977 -
Vivi6g05567 453 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 24 434 IPR033010 GO:0010997|GO:0097027|GO:1904668
Vivi6g05567 453 MobiDBLite consensus disorder prediction 107 121 - -
Vivi6g05567 453 SUPERFAMILY WD40 repeat-like 124 427 IPR036322 GO:0005515
Vivi6g05567 453 CDD WD40 146 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05567 Vivi-Chr6 161395093 161398475 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05567 230 427 Miscellaneous Gene Families AT5G08390 21.106 4.36e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05567 K03363 - qsa:O6P43_009406 719.924