Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05557 ATGTCAAATTTCTTCAGCTCGTGGTTATGGCTATCTCGCTTTCGTTCATCTTCATTCAAGCACTCCTTTCACCGCACTCTCCATAGCATCACCACCACTCCTCACAAAACTACACCCACCTCCTCCAATCTCTTCAACTCACACAGAAGAACAAAGAGCCCCTGGACCACATGGTCAATTCCTCTCGCTCTCGCTCTTTCCGCTGGATCACTTTCTCTTCAACCTCATTCCGATCCTTCCTTCTCAGAATCCATTGATTCCGATACCAGTGTGAGTATTGGGGGCAAAGGTAGCACACAGTATGTTGTTAAGGGATCACAGAAAGAGCTTCCACAAGAGCTTCTCGAGGAGTTGAAAATCATCTGTCAGGATAACATATCACTTGACTATGATGAGAGATATTTCCATGGAAAACCACAAAACAGTTTTCATAAGGCTGTCAATATCCCTGATGTGATTGTTTATCCAAGATCAGAAGAGGAGGTCTCCAAGATTGTCAAATTATGCAACATTCATAAGATTCCTATTGTACCTTACGGTGGAGCAACATCAATCGAGGGTCACACTTTATCCCCCAATGGAGGGGTTTGTATTGACATGGCATTGATGAAAAAAGTGAAAGCATTACATGTTGATGACATGGATGTGGTTGTTGATCCTGGAATTGGGTGGATGGAGCTTAATGAGTATTTGGAACCTTATGGTCTATTTTTTCCACTTGATCCCGGTCCTGGTGCAAGTATTGGTGGGATGTGTGCTACACGCTGTTCTGGCTCGTTAGCTGTGAGGTATGGAACTATGCGTGATAATGTCATCAGTCTCAAGGTAGTTCTTGCCAATGGAGATATTGTGAAGACTGCATCTCGAGCTAGAAAGAGTGCTGCAGGGTATGATCTGACGCGCTTGATGATTGGGAGTGAAGGAACTCTTGGTGTCATAACAGAAGTAACACTGCGGCTTCAGAAAATTCCTCAGTCTTCAGTGGTTGCAATGTGCAATTTCCCTTCTGTGAAGGATGCAGCAGATGTTGCTATTGCCACTATGATGTCTGGAATACAGGTGTCAAGGGTTGAGCTATTGGACGAAGTTCAGATAAAAGCTATCAATATTGCTAATGGGAAGAATTTTCCTGAAAGTCCAACTTTGATGTTTGAATTTATAGGAACAGAGGCATATGCACGTGAACAAACACAAATTGTTCGAAAAATTGTTTTTGAGCACAATGGCTCAGATTTTGTATTTGCAGAAGAACCTGAAGCCAAAAAAGAACTTTGGAAGGTAAGGAAGGAAGCACTATGGGCTTGCTTTGCTATGATACCTAATACGGAAGCAATGATTTCGGATGTATGTGTTCCTTTATCTCATCTAGCTGATATAATTTCAAGGTCTAAAAAGGAGCTGGATGCATCGCCACTGGTTTGCACAGTGATTGCTCATGCTGGTGATGGTAATTTCCACACAGTAATTTTATTTGATCCCACAAAAGAAGAGCAGCGACAGGAAGCAGAGAGACTCAATCATTTTATGGTTCATGCTGCCTTGTCATTGGAAGGAACTTGTACCGGTGAACATGGTGTAGGCACTGGAAAAATGAAGTATCTTGAAGAAGAACTCGGAGTGGAAGCATTGAGGACGATGAAAAAAATAAAATCAGTCTTAGATCCTAACAATATCATGAATCCAGGAAAGCTCATCCCTCCTCATGTTTGTTTCTAA 1716 0.4219 MSNFFSSWLWLSRFRSSSFKHSFHRTLHSITTTPHKTTPTSSNLFNSHRRTKSPWTTWSIPLALALSAGSLSLQPHSDPSFSESIDSDTSVSIGGKGSTQYVVKGSQKELPQELLEELKIICQDNISLDYDERYFHGKPQNSFHKAVNIPDVIVYPRSEEEVSKIVKLCNIHKIPIVPYGGATSIEGHTLSPNGGVCIDMALMKKVKALHVDDMDVVVDPGIGWMELNEYLEPYGLFFPLDPGPGASIGGMCATRCSGSLAVRYGTMRDNVISLKVVLANGDIVKTASRARKSAAGYDLTRLMIGSEGTLGVITEVTLRLQKIPQSSVVAMCNFPSVKDAADVAIATMMSGIQVSRVELLDEVQIKAINIANGKNFPESPTLMFEFIGTEAYAREQTQIVRKIVFEHNGSDFVFAEEPEAKKELWKVRKEALWACFAMIPNTEAMISDVCVPLSHLADIISRSKKELDASPLVCTVIAHAGDGNFHTVILFDPTKEEQRQEAERLNHFMVHAALSLEGTCTGEHGVGTGKMKYLEEELGVEALRTMKKIKSVLDPNNIMNPGKLIPPHVCF 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05557 571 Gene3D - 111 343 IPR016169 -
Vivi6g05557 571 FunFam D-lactate dehydrogenase [cytochrome], mitochondrial 112 343 - -
Vivi6g05557 571 SUPERFAMILY FAD-linked oxidases, C-terminal domain 328 567 IPR016164 GO:0003824|GO:0050660
Vivi6g05557 571 SUPERFAMILY FAD-binding/transporter-associated domain-like 112 324 IPR036318 GO:0050660
Vivi6g05557 571 Pfam FAD binding domain 150 286 IPR006094 GO:0050660
Vivi6g05557 571 Gene3D - 443 524 - -
Vivi6g05557 571 ProSiteProfiles PCMH-type FAD-binding domain profile. 146 323 IPR016166 GO:0071949
Vivi6g05557 571 PANTHER D-LACTATE DEHYDROGENASE 88 567 - -
Vivi6g05557 571 Pfam FAD linked oxidases, C-terminal domain 323 564 IPR004113 GO:0003824|GO:0050660
Vivi6g05557 571 Gene3D - 525 565 IPR016171 -
Vivi6g05557 571 FunFam D-lactate dehydrogenase mitochondrial 525 565 - -
Vivi6g05557 571 FunFam D-lactate dehydrogenase mitochondrial 443 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05557 Vivi-Chr6 161251431 161260039 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05557 K00102 - gmx:100803612 946.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05557 6 161251431 161260039 Vivi6g05557 6 161251431 161260039 ECH