Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05555 ATGAAATTCGGGTGCACGTTTACGGAGTATCTGCAAGAGGAGCGGGAGTGGTTGATGGATGAGAATTGTGCGCATATTAAATATGACAGGTTGAAAAACGTTTTGAAGAGTTGTCAGAATTACAAAGATGGTTCTTCTGATGATCATCATCAATCATGTGAATGTCAATCTTGTCCAGTATGCGATCAGAAGTTCTTCTCAGAGTTGATGAAGGAAGCATCAGATATAGCAGGATACTTCAGTTCAAGAGTTCAACATCTCCTAAATCTTCATATTGCAAAAGGGCTTCAAAGATATGTATTGCGTTTGCGCCAGTGTTTTAAAAATGATATGGGAGCCCTTGACCAAGAAGGGAGAATTCTAATTGAGTATATTTCCATGAATGCAATTGCAATGAGGAAAATACTTAAGAAATATGATAAAGTGCACAGCTCTATGAATGGGGAGAACTTCAAATCTAAGATGCATGCTGAGCATATTGAACTTTTACATTCACCTTGGCTGATTGAATTGGGTGCTTTTTATCTGAATACAAGTGGACTAGATGGTTGCGAGCTTGAAGGAATCCGTGGTCGCTTTTCGTGTAGTTTTAATGTTACTAATGCTGTAATGACATTGACTCTTCCAGATTCTGTTAAGCTTGAGTATCATCTAACTTGTGCAATTTGCCTGGACTTTGTTTTTAATCCATATGCATTGGGTTGTGGCCACATCTTCTGCAAGTCGTGTGCTTGCTCTGCTGCATCTGTGATGATTTTTCAAGGCCTTAAAGCTGCAACTCCAGAGTCAAAGTGTCCTATATGCAGAGAGCGAGGAGTTTATTCCAAATCAGTCCGAATGTCAGAACTCAATCTTCTTATGAAAAGAAGATGCAACGATTATTGGAAAGAGAGGCTAGCTAGGGAAAGAGTCGTCGCTTTGAAGCAGTCAAAGGAATACTGGAATTTGCAGTCTACATATGCAGTTGGATTGCTGTAG 978 0.3957 MKFGCTFTEYLQEEREWLMDENCAHIKYDRLKNVLKSCQNYKDGSSDDHHQSCECQSCPVCDQKFFSELMKEASDIAGYFSSRVQHLLNLHIAKGLQRYVLRLRQCFKNDMGALDQEGRILIEYISMNAIAMRKILKKYDKVHSSMNGENFKSKMHAEHIELLHSPWLIELGAFYLNTSGLDGCELEGIRGRFSCSFNVTNAVMTLTLPDSVKLEYHLTCAICLDFVFNPYALGCGHIFCKSCACSAASVMIFQGLKAATPESKCPICRERGVYSKSVRMSELNLLMKRRCNDYWKERLARERVVALKQSKEYWNLQSTYAVGLL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05555 325 CDD SPX_BAH1-like 2 148 - -
Vivi6g05555 325 ProSiteProfiles SPX domain profile. 1 153 IPR004331 -
Vivi6g05555 325 ProSiteProfiles Zinc finger RING-type profile. 220 269 IPR001841 -
Vivi6g05555 325 SUPERFAMILY RING/U-box 212 271 - -
Vivi6g05555 325 Pfam RING-type zinc-finger 220 266 IPR027370 -
Vivi6g05555 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 320 IPR013083 -
Vivi6g05555 325 CDD RING-HC_BAH1-like 210 283 - -
Vivi6g05555 325 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
Vivi6g05555 325 SMART ring_2 220 268 IPR001841 -
Vivi6g05555 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 323 IPR033326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05555 Vivi-Chr6 161235926 161240237 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05555 K16275 - gmx:100781704 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05555 6 161235926 161240237 Vivi6g05555 6 161235926 161240237 ECH