Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05549 ATGACAATAAAACCCCTCAATCTCATAACAACAAAGCTTTCACCTCTAACAACAATGGTGTCAATCCTAATCCTCATCATCCTCGCTTTCTACTCTTTCCATTTCCCTCACTCTCACTCTCTCAAACATCCAAACAAATCCACCACCTTCCAAAGCCTCTTCCTCTCGTCTTCTTCCAACTCCACCATCTCCTCCTACCTCCGCACCCTCACCATGCACCCTCACCTCGCCGGAACCAAACCCAATTCCAACACCGCTCTTTTCGTTCTCAATCACTTCACTTCCTTAAACCTCAAATCCCATACAACATCCTACAACGTTCTACTCTCTTACCCCTTACACTCTTCACTCTCTTTACATTTAACCAACGGTTCTTTCATCAACCTTCCTTTAACCGAACCATCCGAACCATCCGAACCCGGTTCGGACGTGGTTCACGCCTACCATGCTTATTCACCGTCCGGTTCGGTTTACACTAAGGCGGTGTTCGTTAACTACGGAAGAGATAAAGACTATGAGACCCTTGGGGTGGATGTGAAGGGATGTATAGTGATAGTAAGAAAAGGCGGCGGATTGGGGAGGAATACGGTGGTTGAGAAGGCGGAGAAAAACGGTGCTGCGGCGGTTTTAATCTACAACGACGAAAACGACACGTGGCGTAACGGGTTTGAGAGAGGAAATGTTATGAAAGGTGTGGGGGACCCAGTGAGTCCTGGTTGGGGAAGTGTGGATGGGAGTGAGAGGTTGAGTTTGGAAGATAATGAGGTTTTGGAAAGGTTTCCTAAAATTCCTTCCATGCCAATCTCTGCTAATGTTGCGGATGCTATTTTGTCTTCACTTGGGGGAAATTTGGTGCCTTTCGAATGGAGGGATACCCTGAACCTGAAAGATAAGGGTGTTATTAGCCATGTTGGTCCTGGTCCCACTATGCTCAATTTCACCTACTTGGGTGAAAAAAAGATCGCCACCATTCAAAATGTTTTCGCTGTCATAAAAGGATCAGAAGAGCCTGATCGCCATGTTCTACTTGGGAACCATAGAGATGCATGGACTTATGGTGCTGTTGATCCCAGCAGTGGGACAGCTGCCTTACTTGACCTGGCTCGACGATACTCTATTCTACTGAGTTCAGGTTGGAAGCCAAGGAGGACAATCGTTCTATGCAGTTGGGATGCCGAGGAATTTGGCATGATAGGATCCACTGAATGGGTTGAACAAAACCTTATCAATCTTGGTTCCAAAGCTGTAGCATACCTTAATGTGGATTGTGCTGTTCAAGGCCCTGGATTCTTTGTTGGCTCAACTCCTCAGCTAGACAATCTTATTCGCGAGGTCACAAGAAAGGTCAAGGATCCTGACTCTAAGGGTGTATCAGTATACGAGACTTGGGCTGCTTCCGATGGAGAAGATAATATTCAAAGGCTCGGCAGGGTTGATTCTGATTTTGCTCCTTTTGTGCAACATGCAGGGGTTCCATCTGTTGATGTGTATTACGGAAAAGATTTTCCTGTCTATCACACTGCTTTCGACTCCTATAACTGGATGGCAGAATATGGAGATCCATTCTTCCAGCGCCATGTTGCCGTTACTGGAATTTGGGGCCTTCTAGCTCTGCGCCTGGCCGATGATTCCATTCTTCCGTTCGATTATTTATCATATGCAAATGAGTTACAGTTGTACAGGGACAAATTGAGCAATGTGTTAGACCAGAAAATTTCTCTGCTCCCATTAACAACTTCAATCAAAGAATTTGCTTTGGCTGCAAAAGAAGTCGACGGCGAATTAAAGGAACTTAGATTGGTAGAAACTTCAGGTCAGTTTGTAGATATGAAAAGGCGAGCGATGAATGATAGACTAATGCTCACAGAAAAAGGCTTCCTAGATGGAGACGGACTTAAAGGAAAACAGTGGTTCAAACATCTTGTGTTTGGGCCTCCGAACGACGCTGAAAAGTTAGATTTTTTCCCTGGGATTGCTGATTCTACGACTAGATCAAGTGGCACAAGTGAAAAAGAAACACCAACAGAAATTCAACATGAGATCTGGAGGGTTACCAGAGCCATACAAAGAGCCACTTCTGCACTTAGAGGAGAATTCACATAA 2103 0.4517 MTIKPLNLITTKLSPLTTMVSILILIILAFYSFHFPHSHSLKHPNKSTTFQSLFLSSSSNSTISSYLRTLTMHPHLAGTKPNSNTALFVLNHFTSLNLKSHTTSYNVLLSYPLHSSLSLHLTNGSFINLPLTEPSEPSEPGSDVVHAYHAYSPSGSVYTKAVFVNYGRDKDYETLGVDVKGCIVIVRKGGGLGRNTVVEKAEKNGAAAVLIYNDENDTWRNGFERGNVMKGVGDPVSPGWGSVDGSERLSLEDNEVLERFPKIPSMPISANVADAILSSLGGNLVPFEWRDTLNLKDKGVISHVGPGPTMLNFTYLGEKKIATIQNVFAVIKGSEEPDRHVLLGNHRDAWTYGAVDPSSGTAALLDLARRYSILLSSGWKPRRTIVLCSWDAEEFGMIGSTEWVEQNLINLGSKAVAYLNVDCAVQGPGFFVGSTPQLDNLIREVTRKVKDPDSKGVSVYETWAASDGEDNIQRLGRVDSDFAPFVQHAGVPSVDVYYGKDFPVYHTAFDSYNWMAEYGDPFFQRHVAVTGIWGLLALRLADDSILPFDYLSYANELQLYRDKLSNVLDQKISLLPLTTSIKEFALAAKEVDGELKELRLVETSGQFVDMKRRAMNDRLMLTEKGFLDGDGLKGKQWFKHLVFGPPNDAEKLDFFPGIADSTTRSSGTSEKETPTEIQHEIWRVTRAIQRATSALRGEFT 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05549 700 Gene3D Zn peptidases 61 547 - -
Vivi6g05549 700 FunFam Os01g0740650 protein 317 547 - -
Vivi6g05549 700 Pfam Peptidase family M28 326 513 IPR007484 -
Vivi6g05549 700 Pfam Transferrin receptor-like dimerisation domain 572 695 IPR007365 -
Vivi6g05549 700 Pfam PA domain 159 221 IPR003137 -
Vivi6g05549 700 Gene3D - 115 317 - -
Vivi6g05549 700 Gene3D - 550 700 IPR036757 -
Vivi6g05549 700 PANTHER N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE 17 697 IPR039373 -
Vivi6g05549 700 CDD M28_PSMA_like 322 548 - -
Vivi6g05549 700 SUPERFAMILY Zn-dependent exopeptidases 59 545 - -
Vivi6g05549 700 SUPERFAMILY PA domain 107 328 IPR046450 -
Vivi6g05549 700 SUPERFAMILY Transferrin receptor-like dimerisation domain 547 698 IPR036757 -
Vivi6g05549 700 FunFam N-acetylated-alpha-linked acidic dipeptidase 2 548 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05549 Vivi-Chr6 161195725 161201679 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05549 K01301 - gmx:100818733 999.579
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05549 6 161195725 161201679 Vivi6g05549 6 161195725 161201679 ECH