Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05498 ATGACGAACACTAAACCTTCATCTAAACTTGATGGTGATGGAGATGGAGTCGAAGAAGCGAATGGGTTTGAGAAGTATCAGGAAACTGAGCTTTTTGAGGATACTTTAGTTATTTGTAGTCCGTTTACAGAAAATGAGGTGGAAATGCTCAATCTGAATGATACCGAGATGGTAGAGGATTCGGAGCCTGAGGATTTGACAATTGATGCGAAATGTGAGTATGAGACAGAAGTGGTGCTTGATAGTGAGGACGAAGAAATGAATAATGCAGGCAACGTGGATGAAAAGAGTCCAGCTGTAAGCAATTTTTCGGTGCTATTCAAGAAGAGATTGACTAAGATACCGTGTGAGCAGGCAAACTCAAAATCAAATGCTGCTACTTCTGGGAAATCTGGTACTGGGGGCGAAAGAGCATCAACTAATGCTGACAGCTTCAATGACAACAACCATCGTTTTCACTCACCAGAACCTGAGGATTCAACCCTAGCTGCTCTAGGTTTCGTGGATCAGTACTTGTCATCGCTAGATATGAGCCTGTTTCAAGGAGTTCAAAATGGAAAGATCACTAGAGAGAAATCACCTCATGTCTCCAGTGCAAGAGGATCACTAAGTCTGGCTAAGAAACTTAACGCTCGAACTCAAAATGAAGATAAAGACCCTTTCACATGGGCTGAAAGTAATCAAATTAAAAAAGAAGCTGATACTTGCAGTAAAAAAGTTGAAGCATCTTTCAATTTTGGAAGACACGGACTGGCATATAAGAGAAGAGTACAAAAAAAAGGTAGTCATTCTCAGAACCAAGGAAAATACAGTGCAGGTAATAGATGTGATGAGAATTTAGCCCGAGAACCAAGAATGGCAGCTGACAATAATAACTTTCTCAAGAAATTGGATATTGAGTCCTTTGCCTCAAGAGAGAATGTTGATATTGATTCTAATGTAGCCCGCACAGAAGACGATTATGAAATTGGCTTAGACACTCAAATAGCTGCTGAAGCTATGGATGCCTTAGCCAATCTATCCCCTGCTGACTTTCATTTCAGGGATGCTCACCAATCAGAGAATGTGCCTGATGCATCTCTGAGTGATTTGAAACAAGCTCGTCAGAAAAGTTCTCCATTTAAAGAGAATCCTGGGTCACAGCCTTTTGCACTAAAATTCTACAAGAGAAATGTGTCTGCTTGTAGATTTAGAAAAGTAACTTATAATTCATCATTCAAGCACAATAACGATCAGGAGGAGGGGATTATTAGACATAGGAGGAACAGAAATTGTTTAGCTGCAGCATATCCAGGGAAGATAGATGATGTTAAGGAAAAACGTCTTACTTTATTTACCAGTTCATATGGCGTGGCTAAGAAGAGCAGTTTGAACCATCAGGTTGAAGTTAGTCCACACCTATCTGCAACTAGCAGTTTTTCAAAGACTGATTCTTGGGCTTATCCAAAAGGACCAAGAGGGAAAAGAAAGCGAGCTAATGCTCCTAGAGTTTTGTGTAACAATGATAAGGAAAACAATGTCTATTCCACTACAAGTCTAGAAAATCGCGATGATCTTAAGAAAAAACATATTAATTTATCTTCTTGTTCATATGGAGTGGCTAGAAAGAGCAGTTTGAACCATCAGGTTGAAGTTAGTCCAAAACTATCTGCAACCAGCAGTTTTTCAAACATTGATTCTTGGAGTTATCCAAAGGGATCAAGAGGGAAAAGAAAACGGGCTAATGCCCCAAGTGGTGCATGTATTGATGATAAAGAAAACAATGTCTATTCCACTAAAAGTCTAGAAGGCCGAGATGATGTGCAAAAATCTTGTCTTCCCTCAGTTTCAGCTGGTGATGCTATAAAATTTGAAAACCTGCGTGATACGCAACCCTTGTTGCTGGCACATGTTGAAGTATCATCAAACAAGTGTGTTGTACTGTCGAGTTCAGAAGTTTCAGCTTCAGTTGCTCCAAGTGAAGGCATACAAGTTTCCAATGCTAATCATACATGCAATGAGCACCGCAAAAAGGCATGTGAGAAAATCCTGCCAAAGTCTTCTCTTTTGAAGGAACTTGTCAGATTAGGAGTTCCCAAATCCACCTCAGAAATAATGAGTAAAGATCCGAGACATCGAAGAGATATGACAAATGTTCGAGTTCTGCTTAGCCAACATTTAGATGACAGTATCCTCAAGCAACAACAGAAGATCTTGGCGCGTCTTAATATATCTACTGCGTCAAGCTCAATGGAAGCCACTCATTTCATAGCAGACAAGTTCACACGAACAAAGAATATGCTAGAAACAATGGCTCTTGGGAACTTAGTATTGACACACTTATGGCTTGAGAGTTGTGGACAAGCCAACTGTTTTATTGATGAGAAAAATTATATTTTGAGAGATATGAAAAAGGAAAAAGAAATAGGCTTTAGCATGCCAGTTTCTCTTGCTCGAGCAAGACAAAAGCCACTCCTGAAGGATAAACGAGTATACGTAACACCACATGTAAAGCCTAATAAGGAGGTGGTTGCGAGCTTGGTTACAGCTGTTCATGGCCAGCTAGTGGATGAAGATCAGATATTTGCAGACAAGAATGATAATATCTTAGATGATCTATTGATTCTTTCTTGTGAAGAAGACTTTGCAATATGCCGCCATTTCCTTGAGAGAGGAGCTTCTGCTTACAGTTCAGAGCTTGTTCTGAATGGAATTGTTATCCAGAAATTGGAACTCGAAAGGCATAAACTGTTCGTGAATCAAGTTCCAAATAATAAACTAGGTAAATGTAATTGGTTTGGGAAGGTTTACAGAAGGGGTTTGAGGCCTTTATCTTCAGAATAG 2823 0.3967 MTNTKPSSKLDGDGDGVEEANGFEKYQETELFEDTLVICSPFTENEVEMLNLNDTEMVEDSEPEDLTIDAKCEYETEVVLDSEDEEMNNAGNVDEKSPAVSNFSVLFKKRLTKIPCEQANSKSNAATSGKSGTGGERASTNADSFNDNNHRFHSPEPEDSTLAALGFVDQYLSSLDMSLFQGVQNGKITREKSPHVSSARGSLSLAKKLNARTQNEDKDPFTWAESNQIKKEADTCSKKVEASFNFGRHGLAYKRRVQKKGSHSQNQGKYSAGNRCDENLAREPRMAADNNNFLKKLDIESFASRENVDIDSNVARTEDDYEIGLDTQIAAEAMDALANLSPADFHFRDAHQSENVPDASLSDLKQARQKSSPFKENPGSQPFALKFYKRNVSACRFRKVTYNSSFKHNNDQEEGIIRHRRNRNCLAAAYPGKIDDVKEKRLTLFTSSYGVAKKSSLNHQVEVSPHLSATSSFSKTDSWAYPKGPRGKRKRANAPRVLCNNDKENNVYSTTSLENRDDLKKKHINLSSCSYGVARKSSLNHQVEVSPKLSATSSFSNIDSWSYPKGSRGKRKRANAPSGACIDDKENNVYSTKSLEGRDDVQKSCLPSVSAGDAIKFENLRDTQPLLLAHVEVSSNKCVVLSSSEVSASVAPSEGIQVSNANHTCNEHRKKACEKILPKSSLLKELVRLGVPKSTSEIMSKDPRHRRDMTNVRVLLSQHLDDSILKQQQKILARLNISTASSSMEATHFIADKFTRTKNMLETMALGNLVLTHLWLESCGQANCFIDEKNYILRDMKKEKEIGFSMPVSLARARQKPLLKDKRVYVTPHVKPNKEVVASLVTAVHGQLVDEDQIFADKNDNILDDLLILSCEEDFAICRHFLERGASAYSSELVLNGIVIQKLELERHKLFVNQVPNNKLGKCNWFGKVYRRGLRPLSSE 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05498 940 MobiDBLite consensus disorder prediction 356 378 - -
Vivi6g05498 940 Gene3D BRCT domain 699 816 IPR036420 -
Vivi6g05498 940 MobiDBLite consensus disorder prediction 472 503 - -
Vivi6g05498 940 CDD BRCT_MDC1_rpt1 723 786 - -
Vivi6g05498 940 ProSiteProfiles BRCT domain profile. 704 793 IPR001357 -
Vivi6g05498 940 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 700 793 IPR001357 -
Vivi6g05498 940 MobiDBLite consensus disorder prediction 118 148 - -
Vivi6g05498 940 MobiDBLite consensus disorder prediction 562 583 - -
Vivi6g05498 940 MobiDBLite consensus disorder prediction 256 275 - -
Vivi6g05498 940 CDD BRCT_PAXIP1_rpt6_like 818 904 - -
Vivi6g05498 940 Gene3D BRCT domain 817 917 IPR036420 -
Vivi6g05498 940 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 102 910 - -
Vivi6g05498 940 MobiDBLite consensus disorder prediction 1 23 - -
Vivi6g05498 940 MobiDBLite consensus disorder prediction 118 158 - -
Vivi6g05498 940 SUPERFAMILY BRCT domain 699 809 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05498 Vivi-Chr6 160612019 160616717 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05498 - K20780 gmx:102659913 924.08